RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 ARMC9Q7Z3E5 817 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 HOOK3Q86VS8 718 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 DNAJC7Q99615 494 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 GOLPH3Q9H4A6 298 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 TYW1Q9NV66 732 aaKnown RBP12.65□□□□□ -0.38
NPHP4-204ENST00000460696 PRR12Q9ULL5 1215 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 CNGA1P29973 690 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 RHBDL3P58872 404 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 DCAF15Q66K64 600 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 KCNK18Q7Z418 384 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 KSR1Q8IVT5 923 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 COG1Q8WTW3 980 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 ANKS1AQ92625 1134 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 IWS1Q96ST2 819 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 NYAP2Q9P242 653 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 C5P01031 1676 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 ARFGEF2Q9Y6D5 1785 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 LRRC10BA6NIK2 292 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 IPO5O00410 1097 aaKnown RBP12.64□□□□□ -0.39
NPHP4-204ENST00000460696 GCLMP48507 274 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 ZNF157P51786 506 aaPredicted RBP12.64□□□□□ -0.39
NPHP4-204ENST00000460696 PHLDB2Q86SQ0 1253 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 CATSPER3Q86XQ3 398 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 CAPN6Q9Y6Q1 641 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 A0A1W2PRG0 241 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 GOLGA8KD6RF30 607 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 HERVK_113P62684 666 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 OTUD6AQ7L8S5 288 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 ZFPM1Q8IX07 1006 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 GLIS3Q8NEA6 775 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 MRRFQ96E11 262 aaKnown RBP12.64□□□□□ -0.39
NPHP4-204ENST00000460696 PNMA5Q96PV4 448 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 FUT8Q9BYC5 575 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 ZNF446Q9NWS9 450 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 RNF14Q9UBS8 474 aa12.64□□□□□ -0.39
NPHP4-204ENST00000460696 MED24O75448 989 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 ASNSP08243 561 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 FGRP09769 529 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 CYP11B2P19099 503 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 PRELPP51888 382 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 DMP1Q13316 513 aaPredicted RBP12.63□□□□□ -0.39
NPHP4-204ENST00000460696 ZC2HC1CQ53FD0 456 aaPredicted RBP12.63□□□□□ -0.39
NPHP4-204ENST00000460696 CCDC121Q6ZUS5 278 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 TMEM139Q8IV31 216 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 GLYCTKQ8IVS8 523 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 MAGOHBQ96A72 148 aaKnown RBP12.63□□□□□ -0.39
NPHP4-204ENST00000460696 CEP170P1Q96L14 293 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 MED15Q96RN5 788 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 RAB17Q9H0T7 212 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 RAVER2Q9HCJ3 691 aaKnown RBP12.63□□□□□ -0.39
NPHP4-204ENST00000460696 RSPH10B2B2RC85 870 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 HGSO14964 777 aaPredicted RBP12.63□□□□□ -0.39
NPHP4-204ENST00000460696 VIMP08670 466 aaKnown RBP12.63□□□□□ -0.39
NPHP4-204ENST00000460696 RSPH10BP0C881 870 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 MXI1P50539 228 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 NBPF9Q3BBW0 867 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 PADI6Q6TGC4 694 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 RNF10Q8N5U6 811 aaKnown RBP12.63□□□□□ -0.39
NPHP4-204ENST00000460696 PROCA1Q8NCQ7 364 aaPredicted RBP12.63□□□□□ -0.39
NPHP4-204ENST00000460696 DDX47Q9H0S4 455 aaKnown RBP12.63□□□□□ -0.39
NPHP4-204ENST00000460696 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.63□□□□□ -0.39
NPHP4-204ENST00000460696 TM4SF1P30408 202 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 SHMT1P34896 483 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 ACCSQ96QU6 501 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 LXNQ9BS40 222 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 BLOC1S4Q9NUP1 217 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 ARHGAP20Q9P2F6 1191 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 ATP8A1Q9Y2Q0 1164 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 PTPN22Q9Y2R2 807 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 ZHX2Q9Y6X8 837 aa12.63□□□□□ -0.39
NPHP4-204ENST00000460696 LRRIQ4A6NIV6 560 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 KLRC4O43908 158 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 DKC1O60832 514 aaKnown RBP eCLIP12.62□□□□□ -0.39
NPHP4-204ENST00000460696 KIF4AO95239 1232 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 KLRC1P26715 233 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 LIG4P49917 911 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 APBA1Q02410 837 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 NPY5RQ15761 445 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 TTC31Q49AM3 519 aaPredicted RBP12.62□□□□□ -0.39
NPHP4-204ENST00000460696 CEP55Q53EZ4 464 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 ZNF746Q6NUN9 644 aaPredicted RBP12.62□□□□□ -0.39
NPHP4-204ENST00000460696 ZNF365Q70YC5 407 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 KCND1Q9NSA2 647 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 FGGP02679 453 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 UCHL3P15374 230 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 INPP5BP32019 993 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 ECE1P42892 770 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 PLTPP55058 493 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 DRAP1Q14919 205 aaPredicted RBP12.62□□□□□ -0.39
NPHP4-204ENST00000460696 SLC18A3Q16572 532 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 RSRC2Q7L4I2 434 aaKnown RBP12.62□□□□□ -0.39
NPHP4-204ENST00000460696 FAM160B2Q86V87 743 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 PRMT6Q96LA8 375 aaPredicted RBP12.62□□□□□ -0.39
NPHP4-204ENST00000460696 EDEM3Q9BZQ6 932 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 FBXO28Q9NVF7 368 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 NNTQ13423 1086 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 BEND6Q5SZJ8 279 aaPredicted RBP12.62□□□□□ -0.39
NPHP4-204ENST00000460696 LDHDQ86WU2 507 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 ACER1Q8TDN7 264 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 CCDC77Q9BR77 488 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms