RNA–Protein interactions for RNA: ENST00000460573.5

C9orf3-209, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-209ENST00000460573 SPATA31C1P0DKV0 1188 aa25.13■■□□□ 1.61
C9orf3-209ENST00000460573 XRCC6P12956 609 aaKnown RBP eCLIP25.13■■□□□ 1.61
C9orf3-209ENST00000460573 ZNF200P98182 395 aaPredicted RBP25.13■■□□□ 1.61
C9orf3-209ENST00000460573 HIC1Q14526 733 aa25.13■■□□□ 1.61
C9orf3-209ENST00000460573 TAF2Q6P1X5 1199 aa25.13■■□□□ 1.61
C9orf3-209ENST00000460573 SERINC5Q86VE9 423 aa25.13■■□□□ 1.61
C9orf3-209ENST00000460573 CATSPER3Q86XQ3 398 aa25.13■■□□□ 1.61
C9orf3-209ENST00000460573 SLC17A8Q8NDX2 589 aa25.13■■□□□ 1.61
C9orf3-209ENST00000460573 MTMR10Q9NXD2 777 aa25.13■■□□□ 1.61
C9orf3-209ENST00000460573 TUBE1Q9UJT0 475 aa25.13■■□□□ 1.61
C9orf3-209ENST00000460573 LAMA3Q16787 3333 aa25.12■■□□□ 1.61
C9orf3-209ENST00000460573 SPTLC2O15270 562 aa25.12■■□□□ 1.61
C9orf3-209ENST00000460573 TREHO43280 583 aa25.12■■□□□ 1.61
C9orf3-209ENST00000460573 PPP6R2O75170 966 aa25.12■■□□□ 1.61
C9orf3-209ENST00000460573 MARCKSP29966 332 aaPredicted RBP25.12■■□□□ 1.61
C9orf3-209ENST00000460573 CCT6AP40227 531 aaKnown RBP25.12■■□□□ 1.61
C9orf3-209ENST00000460573 IGBP1P78318 339 aa25.12■■□□□ 1.61
C9orf3-209ENST00000460573 KRT85P78386 507 aa25.12■■□□□ 1.61
C9orf3-209ENST00000460573 DNM1Q05193 864 aaKnown RBP25.12■■□□□ 1.61
C9orf3-209ENST00000460573 BFSP2Q13515 415 aa25.12■■□□□ 1.61
C9orf3-209ENST00000460573 FOXD4L6Q3SYB3 417 aaPredicted RBP25.12■■□□□ 1.61
C9orf3-209ENST00000460573 MARCH8Q5T0T0 291 aa25.12■■□□□ 1.61
C9orf3-209ENST00000460573 FOXD4L3Q6VB84 417 aaPredicted RBP25.12■■□□□ 1.61
C9orf3-209ENST00000460573 TRMT1LQ7Z2T5 733 aaKnown RBP25.12■■□□□ 1.61
C9orf3-209ENST00000460573 KCTD17Q8N5Z5 321 aa25.12■■□□□ 1.61
C9orf3-209ENST00000460573 CAGE1Q8TC20 777 aa25.12■■□□□ 1.61
C9orf3-209ENST00000460573 SNX29Q8TEQ0 813 aa25.12■■□□□ 1.61
C9orf3-209ENST00000460573 CTAGE1Q96RT6 745 aa25.12■■□□□ 1.61
C9orf3-209ENST00000460573 WRAP73Q9P2S5 460 aaPredicted RBP25.12■■□□□ 1.61
C9orf3-209ENST00000460573 SEPT9Q9UHD8 586 aaPredicted RBP25.12■■□□□ 1.61
C9orf3-209ENST00000460573 FBXO2Q9UK22 296 aaPredicted RBP25.12■■□□□ 1.61
C9orf3-209ENST00000460573 MAGEB2O15479 319 aa25.11■■□□□ 1.61
C9orf3-209ENST00000460573 MED24O75448 989 aa25.11■■□□□ 1.61
C9orf3-209ENST00000460573 YWHABP31946 246 aaKnown RBP25.11■■□□□ 1.61
C9orf3-209ENST00000460573 FAM109BQ6ICB4 259 aaPredicted RBP25.11■■□□□ 1.61
C9orf3-209ENST00000460573 MTHFD1LQ6UB35 978 aa25.11■■□□□ 1.61
C9orf3-209ENST00000460573 ANO5Q75V66 913 aa25.11■■□□□ 1.61
C9orf3-209ENST00000460573 EXOC8Q8IYI6 725 aa25.11■■□□□ 1.61
C9orf3-209ENST00000460573 KRI1Q8N9T8 703 aaKnown RBP25.11■■□□□ 1.61
C9orf3-209ENST00000460573 KCNG4Q8TDN1 519 aa25.11■■□□□ 1.61
C9orf3-209ENST00000460573 IPO9Q96P70 1041 aaKnown RBP25.11■■□□□ 1.61
C9orf3-209ENST00000460573 NACC1Q96RE7 527 aa25.11■■□□□ 1.61
C9orf3-209ENST00000460573 HIPK3Q9H422 1215 aa25.11■■□□□ 1.61
C9orf3-209ENST00000460573 ANKEF1Q9NU02 776 aa25.11■■□□□ 1.61
C9orf3-209ENST00000460573 KAT6AQ92794 2004 aa25.11■■□□□ 1.61
C9orf3-209ENST00000460573 ZBTB42B2RXF5 422 aa25.1■■□□□ 1.61
C9orf3-209ENST00000460573 PITPNM1O00562 1244 aa25.1■■□□□ 1.61
C9orf3-209ENST00000460573 CAND2O75155 1236 aa25.1■■□□□ 1.61
C9orf3-209ENST00000460573 CYP2C9P11712 490 aa25.1■■□□□ 1.61
C9orf3-209ENST00000460573 KLRC1P26715 233 aa25.1■■□□□ 1.61
C9orf3-209ENST00000460573 SMAD3P84022 425 aaKnown RBP25.1■■□□□ 1.61
C9orf3-209ENST00000460573 RBL2Q08999 1139 aa25.1■■□□□ 1.61
C9orf3-209ENST00000460573 TARBP2Q15633 366 aaKnown RBP25.1■■□□□ 1.61
C9orf3-209ENST00000460573 NOC4LQ9BVI4 516 aaKnown RBP25.1■■□□□ 1.61
C9orf3-209ENST00000460573 STXBP5LQ9Y2K9 1186 aa25.1■■□□□ 1.61
C9orf3-209ENST00000460573 PCDHA2Q9Y5H9 948 aa25.1■■□□□ 1.61
C9orf3-209ENST00000460573 KDM3AQ9Y4C1 1321 aa25.1■■□□□ 1.61
C9orf3-209ENST00000460573 UBA7P41226 1012 aa25.09■■□□□ 1.61
C9orf3-209ENST00000460573 EPHB4P54760 987 aa25.09■■□□□ 1.61
C9orf3-209ENST00000460573 PSRC1Q6PGN9 363 aaPredicted RBP25.09■■□□□ 1.61
C9orf3-209ENST00000460573 RPAINQ86UA6 219 aa25.09■■□□□ 1.61
C9orf3-209ENST00000460573 RSPH3Q86UC2 560 aa25.09■■□□□ 1.61
C9orf3-209ENST00000460573 TRAPPC12Q8WVT3 735 aa25.09■■□□□ 1.61
C9orf3-209ENST00000460573 NT5C3AQ9H0P0 336 aa25.09■■□□□ 1.61
C9orf3-209ENST00000460573 MTIF3Q9H2K0 278 aaKnown RBP25.09■■□□□ 1.61
C9orf3-209ENST00000460573 CYP26B1Q9NR63 512 aa25.09■■□□□ 1.61
C9orf3-209ENST00000460573 CHMP5Q9NZZ3 219 aa25.09■■□□□ 1.61
C9orf3-209ENST00000460573 RCOR1Q9UKL0 485 aa25.09■■□□□ 1.61
C9orf3-209ENST00000460573 SMIM35A0A1B0GVV1 85 aa25.08■■□□□ 1.61
C9orf3-209ENST00000460573 C22orf31O95567 290 aa25.08■■□□□ 1.61
C9orf3-209ENST00000460573 CSF2RAP15509 400 aa25.08■■□□□ 1.61
C9orf3-209ENST00000460573 CYP2C18P33260 490 aa25.08■■□□□ 1.61
C9orf3-209ENST00000460573 TBC1D8BQ0IIM8 1120 aa25.08■■□□□ 1.61
C9orf3-209ENST00000460573 MTERF2Q49AM1 385 aa25.08■■□□□ 1.61
C9orf3-209ENST00000460573 HYIQ5T013 277 aa25.08■■□□□ 1.61
C9orf3-209ENST00000460573 RETREG2Q8NC44 543 aa25.08■■□□□ 1.61
C9orf3-209ENST00000460573 CEP170P1Q96L14 293 aa25.08■■□□□ 1.61
C9orf3-209ENST00000460573 JPH2Q9BR39 696 aaPredicted RBP25.08■■□□□ 1.61
C9orf3-209ENST00000460573 MMTAG2Q9BU76 263 aaKnown RBP25.08■■□□□ 1.61
C9orf3-209ENST00000460573 DBR1Q9UK59 544 aaKnown RBP25.08■■□□□ 1.61
C9orf3-209ENST00000460573 PP2D1A8MPX8 630 aa25.07■■□□□ 1.6
C9orf3-209ENST00000460573 NCLP19338 710 aaKnown RBP25.07■■□□□ 1.6
C9orf3-209ENST00000460573 CDC25AP30304 524 aa25.07■■□□□ 1.6
C9orf3-209ENST00000460573 GRIN1Q05586 938 aa25.07■■□□□ 1.6
C9orf3-209ENST00000460573 XKR9Q5GH70 373 aa25.07■■□□□ 1.6
C9orf3-209ENST00000460573 CABP7Q86V35 215 aa25.07■■□□□ 1.6
C9orf3-209ENST00000460573 NME8Q8N427 588 aa25.07■■□□□ 1.6
C9orf3-209ENST00000460573 DHX38Q92620 1227 aaKnown RBP25.07■■□□□ 1.6
C9orf3-209ENST00000460573 CEP89Q96ST8 783 aa25.07■■□□□ 1.6
C9orf3-209ENST00000460573 BUD13Q9BRD0 619 aaKnown RBP eCLIP25.07■■□□□ 1.63e-10■■■□□ 15.4
C9orf3-209ENST00000460573 SCAND2PQ9GZW5 306 aaPredicted RBP25.07■■□□□ 1.6
C9orf3-209ENST00000460573 CSRNP2Q9H175 543 aa25.07■■□□□ 1.6
C9orf3-209ENST00000460573 KIAA1024Q9UPX6 916 aa25.07■■□□□ 1.6
C9orf3-209ENST00000460573 HSFX4A0A1B0GTS1 333 aaPredicted RBP25.06■■□□□ 1.6
C9orf3-209ENST00000460573 HSFX3A0A1B0GWH4 333 aaPredicted RBP25.06■■□□□ 1.6
C9orf3-209ENST00000460573 CUTAO60888 179 aa25.06■■□□□ 1.6
C9orf3-209ENST00000460573 PARNO95453 639 aaKnown RBP25.06■■□□□ 1.6
C9orf3-209ENST00000460573 TMOD1P28289 359 aa25.06■■□□□ 1.6
C9orf3-209ENST00000460573 RFC5P40937 340 aa25.06■■□□□ 1.6
C9orf3-209ENST00000460573 TRIM71Q2Q1W2 868 aaKnown RBP25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms