RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 FANCLQ9NW38 375 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 GFOD1Q9NXC2 390 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 TBK1Q9UHD2 729 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 DDX49Q9Y6V7 483 aaKnown RBP6.2□□□□□ -1.42
VPS41-209ENST00000457055 SHANK2Q9UPX8 1470 aa6.2□□□□□ -1.42
VPS41-209ENST00000457055 SETBP1Q9Y6X0 1596 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 KIF27Q86VH2 1401 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 FADS2P1A8MWK0 482 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 hCG_1984214I3L0E3 225 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 MPOP05164 745 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 VCAM1P19320 739 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 ENDOUP21128 410 aaKnown RBP6.19□□□□□ -1.42
VPS41-209ENST00000457055 MCM4P33991 863 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 CDR1P51861 262 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 CLCQ05315 142 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 COX10Q12887 443 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 NFIXQ14938 502 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 KIR3DS1Q14943 382 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 PPP2R5BQ15173 497 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 LRRC41Q15345 812 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 FAM83BQ5T0W9 1011 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 AGAP9Q5VTM2 703 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 MMS22LQ6ZRQ5 1243 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 MCM10Q7L590 875 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 ELOA2Q8IYF1 753 aaPredicted RBP6.19□□□□□ -1.42
VPS41-209ENST00000457055 OR8H2Q8N162 312 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 DACT3Q96B18 629 aaPredicted RBP6.19□□□□□ -1.42
VPS41-209ENST00000457055 SCLT1Q96NL6 688 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 GSDMAQ96QA5 445 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 SRPK1Q96SB4 655 aaKnown RBP6.19□□□□□ -1.42
VPS41-209ENST00000457055 FAM167BQ9BTA0 163 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 CDADC1Q9BWV3 514 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 CSRNP2Q9H175 543 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 RPAP3Q9H6T3 665 aaPredicted RBP6.19□□□□□ -1.42
VPS41-209ENST00000457055 ERVK13-1Q9NX77 482 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 C9orf78Q9NZ63 289 aaPredicted RBP6.19□□□□□ -1.42
VPS41-209ENST00000457055 UBP1Q9NZI7 540 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 GGT7Q9UJ14 662 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 DAAM1Q9Y4D1 1078 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 PCDHB12Q9Y5F1 795 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 SNX5Q9Y5X3 404 aa6.19□□□□□ -1.42
VPS41-209ENST00000457055 C9orf84Q5VXU9 1444 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 SCAPERQ9BY12 1400 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 ANKRD18BA2A2Z9 1011 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 WTIPA6NIX2 430 aaPredicted RBP6.18□□□□□ -1.42
VPS41-209ENST00000457055 FOXN3O00409 490 aaPredicted RBP6.18□□□□□ -1.42
VPS41-209ENST00000457055 IRS4O14654 1257 aaPredicted RBP6.18□□□□□ -1.42
VPS41-209ENST00000457055 FOXD2O60548 495 aaPredicted RBP6.18□□□□□ -1.42
VPS41-209ENST00000457055 PPFIA2O75334 1257 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 E2F6O75461 281 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 BBOX1O75936 387 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 SASH1O94885 1247 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 IL4RP24394 825 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 HOXD10P28358 340 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 DDIT3P35638 169 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 PRPHP41219 470 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 MASP1P48740 699 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 APOBRQ0VD83 1088 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 CHAF1AQ13111 956 aaPredicted RBP6.18□□□□□ -1.42
VPS41-209ENST00000457055 TTF1Q15361 905 aaPredicted RBP6.18□□□□□ -1.42
VPS41-209ENST00000457055 MUM1Q2TAK8 710 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 TTC31Q49AM3 519 aaPredicted RBP6.18□□□□□ -1.42
VPS41-209ENST00000457055 ISM2Q6H9L7 571 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 HS2ST1Q7LGA3 356 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 TMC6Q7Z403 805 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 ERC1Q8IUD2 1116 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 TMEM192Q8IY95 271 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 WDR66Q8TBY9 1149 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 MZB1Q8WU39 189 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 NELL1Q92832 810 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 ZBTB10Q96DT7 871 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 SLC6A18Q96N87 628 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.18□□□□□ -1.422e-7■■■□□ 17.8
VPS41-209ENST00000457055 KRTAP4-5Q9BYR2 181 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 ANTXR1Q9H6X2 564 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 MED4Q9NPJ6 270 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 ZNHIT6Q9NWK9 470 aaKnown RBP6.18□□□□□ -1.42
VPS41-209ENST00000457055 RTEL1Q9NZ71 1219 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 CPSF2Q9P2I0 782 aaKnown RBP6.18□□□□□ -1.42
VPS41-209ENST00000457055 ADAMTS1Q9UHI8 967 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 FBXL21Q9UKT6 434 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 TPCN1Q9ULQ1 816 aa6.18□□□□□ -1.42
VPS41-209ENST00000457055 PTPRKQ15262 1439 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 TCOF1Q13428 1488 aaKnown RBP6.17□□□□□ -1.42
VPS41-209ENST00000457055 MAGI2Q86UL8 1455 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 RAPGEF2Q9Y4G8 1499 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 BOLA2-SMG1P6H3BVE0 249 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 SNX2O60749 519 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 ZNF205O95201 554 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 SCGB1D2O95969 90 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 NME1P15531 152 aaKnown RBP6.17□□□□□ -1.42
VPS41-209ENST00000457055 PRKCAP17252 672 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 SYN1P17600 705 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 BMP8BP34820 402 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 ADD2P35612 726 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 SARSP49591 514 aaKnown RBP6.17□□□□□ -1.42
VPS41-209ENST00000457055 ZNF165P49910 485 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 COPAP53621 1224 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 UBXN2AP68543 259 aa6.17□□□□□ -1.42
VPS41-209ENST00000457055 TMEM62Q0P6H9 643 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms