RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 AASDHPPTQ9NRN7 309 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 CCDC39Q9UFE4 941 aa5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 PA2G4Q9UQ80 394 aaKnown RBP5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.34□□□□□ -1.55
CCDC88A-209ENST00000456975 BTBD11A6QL63 1104 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 KIF2AO00139 706 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 PDE2AO00408 941 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 SUSD5O60279 629 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 PIP5K1CO60331 668 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 KPNA6O60684 536 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 SNX2O60749 519 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 ZNF254O75437 659 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 RASGRP1O95267 797 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 ARIH2O95376 493 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 SELPP16109 830 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 CYP2C19P33261 490 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 HALP42357 657 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 STT3AP46977 705 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 POLD2P49005 469 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 MNAT1P51948 309 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 HYAL2Q12891 473 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 SNX1Q13596 522 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 LBRQ14739 615 aaKnown RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 ZNF423Q2M1K9 1284 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 HS1BP3Q53T59 392 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 MAP1SQ66K74 1059 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 KAZNQ674X7 775 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 KSR2Q6VAB6 950 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 UNC5AQ6ZN44 842 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 JPH3Q8WXH2 748 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 PIBF1Q8WXW3 757 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 EZH1Q92800 747 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 EPSTI1Q96J88 318 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 POP1Q99575 1024 aaKnown RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 AP1M1Q9BXS5 423 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 TRIM8Q9BZR9 551 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 IGFLR1Q9H665 355 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 TLR7Q9NYK1 1049 aaKnown RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 C9orf78Q9NZ63 289 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 MRFAP1Q9Y605 127 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 LMO7Q8WWI1 1683 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 TUBGCP6Q96RT7 1819 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 OVOS2A0A0G2JMS6 1433 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 OVOS2A0A0J9YW53 1432 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 OVOS2Q6IE36 1432 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 PPIP5K1Q6PFW1 1433 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 SSH2Q76I76 1423 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 CGNL1Q0VF96 1302 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 TTC24A2A3L6 582 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 GOLGA6L19H0YKK7 550 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 RTN3O95197 1032 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 ITGBL1O95965 494 aaPredicted RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 SLC4A1P02730 911 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 BMP2P12643 396 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 S100A5P33763 92 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 CENPAP49450 140 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 GABREP78334 506 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 ROR1Q01973 937 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 RPL6Q02878 288 aaKnown RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 RABEP1Q15276 862 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 GPR162Q16538 588 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 ANKRD39Q53RE8 183 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 WDR44Q5JSH3 913 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 RRP12Q5JTH9 1297 aaKnown RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 ZNF697Q5TEC3 545 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 PPP4R3AQ6IN85 833 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 ATF7IPQ6VMQ6 1270 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 SPC24Q8NBT2 197 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 SNIP1Q8TAD8 396 aaKnown RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 TTC8Q8TAM2 541 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 MIPOL1Q8TD10 442 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 STON2Q8WXE9 905 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 HPS1Q92902 700 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 ARHGEF2Q92974 986 aaKnown RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 CORO1BQ9BR76 489 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 SYNCQ9H7C4 482 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 ZNF446Q9NWS9 450 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 WDR37Q9Y2I8 494 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 PCDHGB3Q9Y5G1 929 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 CPSF1Q10570 1443 aaKnown RBP5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 ACEP12821 1306 aa5.33□□□□□ -1.56
CCDC88A-209ENST00000456975 CD163L1Q9NR16 1453 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 KIAA0232Q92628 1395 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 QSER1Q2KHR3 1735 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 AKR1B15C9JRZ8 316 aaPredicted RBP5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 TNFRSF10AO00220 468 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 HTR3BO95264 441 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 EYA4O95677 639 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 KRT10P13645 584 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 NME2P22392 152 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 USP8P40818 1118 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 NEK2P51955 445 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 TMF1P82094 1093 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 CYP4A11Q02928 519 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 DDX10Q13206 875 aaKnown RBP5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 SUZ12Q15022 739 aaKnown RBP5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 CHRNA2Q15822 529 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 SPRYD7Q5W111 196 aa5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 CAPRIN2Q6IMN6 1127 aaKnown RBP5.32□□□□□ -1.56
CCDC88A-209ENST00000456975 MMS22LQ6ZRQ5 1243 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms