RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 FAM133AQ8N9E0 248 aa16.52■□□□□ 0.24
LDLR-202ENST00000455727 GLIS2Q9BZE0 524 aaPredicted RBP16.52■□□□□ 0.24
LDLR-202ENST00000455727 RNF14Q9UBS8 474 aa16.52■□□□□ 0.24
LDLR-202ENST00000455727 RPTORQ8N122 1335 aa16.52■□□□□ 0.24
LDLR-202ENST00000455727 ZMYM2Q9UBW7 1377 aa16.52■□□□□ 0.24
LDLR-202ENST00000455727 A0A087X0T9 212 aa16.52■□□□□ 0.23
LDLR-202ENST00000455727 SFI1A8K8P3 1242 aa16.52■□□□□ 0.23
LDLR-202ENST00000455727 FAM228BP0C875 321 aa16.52■□□□□ 0.23
LDLR-202ENST00000455727 GUCY2CP25092 1073 aa16.52■□□□□ 0.23
LDLR-202ENST00000455727 PSMC2P35998 433 aaKnown RBP16.52■□□□□ 0.23
LDLR-202ENST00000455727 PRKCIP41743 596 aa16.52■□□□□ 0.23
LDLR-202ENST00000455727 UBXN2AP68543 259 aa16.52■□□□□ 0.23
LDLR-202ENST00000455727 CXCL9Q07325 125 aa16.52■□□□□ 0.23
LDLR-202ENST00000455727 CCDC70Q6NSX1 233 aa16.52■□□□□ 0.23
LDLR-202ENST00000455727 ZNF720Q7Z2F6 126 aa16.52■□□□□ 0.23
LDLR-202ENST00000455727 PRPF38AQ8NAV1 312 aaKnown RBP16.52■□□□□ 0.23
LDLR-202ENST00000455727 LPAR1Q92633 364 aa16.52■□□□□ 0.23
LDLR-202ENST00000455727 FIZ1Q96SL8 496 aa16.52■□□□□ 0.23
LDLR-202ENST00000455727 TLR10Q9BXR5 811 aa16.52■□□□□ 0.23
LDLR-202ENST00000455727 PDGFDQ9GZP0 370 aaPredicted RBP16.52■□□□□ 0.23
LDLR-202ENST00000455727 VIPAS39Q9H9C1 493 aa16.52■□□□□ 0.23
LDLR-202ENST00000455727 GINM1Q9NU53 330 aa16.52■□□□□ 0.23
LDLR-202ENST00000455727 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.52■□□□□ 0.23
LDLR-202ENST00000455727 ZNF536O15090 1300 aa16.52■□□□□ 0.23
LDLR-202ENST00000455727 PHF20L1A8MW92 1017 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 POLD1P28340 1107 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 CASP4P49662 377 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 KCNA1Q09470 495 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 MCF2L2Q86YR7 1114 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 SLC16A10Q8TF71 515 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 COG1Q8WTW3 980 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 BCAS3Q9H6U6 928 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 MAP3K20Q9NYL2 800 aaKnown RBP16.51■□□□□ 0.23
LDLR-202ENST00000455727 CCPG1Q9ULG6 757 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 ATP8B3O60423 1300 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 WDR46O15213 610 aaKnown RBP16.51■□□□□ 0.23
LDLR-202ENST00000455727 PPP1R12BO60237 982 aaPredicted RBP16.51■□□□□ 0.23
LDLR-202ENST00000455727 NMT1P30419 496 aaKnown RBP16.51■□□□□ 0.23
LDLR-202ENST00000455727 INPP5BP32019 993 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 NBPF9Q3BBW0 867 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 SLC30A10Q6XR72 485 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 SAMD3Q8N6K7 520 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 ANKRD13CQ8N6S4 541 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 SPAG5Q96R06 1193 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 WRAP73Q9P2S5 460 aaPredicted RBP16.51■□□□□ 0.23
LDLR-202ENST00000455727 ADAMTS1Q9UHI8 967 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 PCDHGC5Q9Y5F6 944 aa16.51■□□□□ 0.23
LDLR-202ENST00000455727 ZBTB39O15060 712 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 CLIC2O15247 247 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 POLR3GO15318 223 aaPredicted RBP16.5■□□□□ 0.23
LDLR-202ENST00000455727 ACTN1P12814 892 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 ITGB5P18084 799 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 DCAF17Q5H9S7 520 aaPredicted RBP16.5■□□□□ 0.23
LDLR-202ENST00000455727 GPIHBP1Q8IV16 184 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 SPATA4Q8NEY3 305 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 DRC1Q96MC2 740 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 AGBL1Q96MI9 1066 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 ZNF341Q9BYN7 854 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 ACBD3Q9H3P7 528 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 SUGCTQ9HAC7 445 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 MYOZ2Q9NPC6 264 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 SIX2Q9NPC8 291 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 DMAC2Q9NW81 257 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 PCDHB13Q9Y5F0 798 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 JAM2P57087 298 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 PTK2Q05397 1052 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 KIAA0753Q2KHM9 967 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 NFRKBQ6P4R8 1299 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 HS2ST1Q7LGA3 356 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 FAM178BQ8IXR5 827 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 FAM186BQ8IYM0 893 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 GOLGA5Q8TBA6 731 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 CLEC4DQ8WXI8 215 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 LXNQ9BS40 222 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.5■□□□□ 0.23
LDLR-202ENST00000455727 STRA6Q9BX79 667 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 POLD4Q9HCU8 107 aa16.5■□□□□ 0.23
LDLR-202ENST00000455727 GOLGB1Q14789 3259 aaKnown RBP16.49■□□□□ 0.23
LDLR-202ENST00000455727 BUB1O43683 1085 aa16.49■□□□□ 0.23
LDLR-202ENST00000455727 KLRC1P26715 233 aa16.49■□□□□ 0.23
LDLR-202ENST00000455727 PAFAH1B1P43034 410 aa16.49■□□□□ 0.23
LDLR-202ENST00000455727 ARID5AQ03989 594 aa16.49■□□□□ 0.23
LDLR-202ENST00000455727 MYBPC2Q14324 1141 aa16.49■□□□□ 0.23
LDLR-202ENST00000455727 ZC2HC1CQ53FD0 456 aaPredicted RBP16.49■□□□□ 0.23
LDLR-202ENST00000455727 TCERG1LQ5VWI1 586 aa16.49■□□□□ 0.23
LDLR-202ENST00000455727 CIAPIN1Q6FI81 312 aa16.49■□□□□ 0.23
LDLR-202ENST00000455727 CCNI2Q6ZMN8 369 aaPredicted RBP16.49■□□□□ 0.23
LDLR-202ENST00000455727 KIAA1683Q9H0B3 1180 aa16.49■□□□□ 0.23
LDLR-202ENST00000455727 PDE11AQ9HCR9 933 aa16.49■□□□□ 0.23
LDLR-202ENST00000455727 ZCCHC17Q9NP64 241 aaKnown RBP16.49■□□□□ 0.23
LDLR-202ENST00000455727 FER1L6Q2WGJ9 1857 aa16.49■□□□□ 0.23
LDLR-202ENST00000455727 H3BQF6 201 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 NAP1L1P55209 391 aaKnown RBP16.48■□□□□ 0.23
LDLR-202ENST00000455727 C2orf54Q08AI8 447 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 TNIP1Q15025 636 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 ZNF571Q7Z3V5 609 aaPredicted RBP16.48■□□□□ 0.23
LDLR-202ENST00000455727 SLC9A9Q8IVB4 645 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 KCNH7Q9NS40 1196 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 ARHGEF35A5YM69 484 aa16.48■□□□□ 0.23
LDLR-202ENST00000455727 MAPTP10636 758 aaKnown RBP16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms