RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 ECM1Q16610 540 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 OLFML2BQ68BL8 750 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 METTL7BQ6UX53 244 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 BANK1Q8NDB2 785 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 RABGGTAQ92696 567 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 STAMQ92783 540 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 ERCC4Q92889 916 aaPredicted RBP17.54■□□□□ 0.4
SNX17-204ENST00000453453 NACC1Q96RE7 527 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 BMP2KQ9NSY1 1161 aaPredicted RBP17.54■□□□□ 0.4
SNX17-204ENST00000453453 SAGE1Q9NXZ1 904 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 GJD2Q9UKL4 321 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 E9PMD0 336 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 SSBP05455 408 aaKnown RBP eCLIP17.54■□□□□ 0.4
SNX17-204ENST00000453453 PRR29P0C7W0 189 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 PLA2G4BP0C869 781 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 ACTR2P61160 394 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 PSMC5P62195 406 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 IRF5Q13568 498 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 MCM6Q14566 821 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 LY6KQ17RY6 165 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 ATP6V0A1Q93050 837 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 TRIM47Q96LD4 638 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 RMND1Q9NWS8 449 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 PCDHA5Q9Y5H7 936 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 CASP8AP2Q9UKL3 1982 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 ZSWIM8A7E2V4 1837 aa17.54■□□□□ 0.4
SNX17-204ENST00000453453 MYH9P35579 1960 aaKnown RBP17.53■□□□□ 0.4
SNX17-204ENST00000453453 A0A0U1RQG5 324 aaPredicted RBP17.53■□□□□ 0.4
SNX17-204ENST00000453453 RBM47A0AV96 593 aaKnown RBP17.53■□□□□ 0.4
SNX17-204ENST00000453453 FARP2O94887 1054 aaPredicted RBP17.53■□□□□ 0.4
SNX17-204ENST00000453453 EYA4O95677 639 aa17.53■□□□□ 0.4
SNX17-204ENST00000453453 SNAI1O95863 264 aaPredicted RBP17.53■□□□□ 0.4
SNX17-204ENST00000453453 UBASH3AP57075 661 aa17.53■□□□□ 0.4
SNX17-204ENST00000453453 DPYDQ12882 1025 aa17.53■□□□□ 0.4
SNX17-204ENST00000453453 ACVR2BQ13705 512 aa17.53■□□□□ 0.4
SNX17-204ENST00000453453 KCNK18Q7Z418 384 aa17.53■□□□□ 0.4
SNX17-204ENST00000453453 DHX37Q8IY37 1157 aaKnown RBP17.53■□□□□ 0.4
SNX17-204ENST00000453453 TRIML1Q8N9V2 468 aa17.53■□□□□ 0.4
SNX17-204ENST00000453453 BBXQ8WY36 941 aaPredicted RBP17.53■□□□□ 0.4
SNX17-204ENST00000453453 CCDC43Q96MW1 224 aaKnown RBP17.53■□□□□ 0.4
SNX17-204ENST00000453453 GSDMAQ96QA5 445 aa17.53■□□□□ 0.4
SNX17-204ENST00000453453 C7orf25Q9BPX7 421 aa17.53■□□□□ 0.4
SNX17-204ENST00000453453 NOP56O00567 594 aaKnown RBP17.52■□□□□ 0.4
SNX17-204ENST00000453453 BACH1O14867 736 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 STX10O60499 249 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 SORBS3O60504 671 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 SUPT20HL2P0C7V6 817 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 XRCC5P13010 732 aaKnown RBP17.52■□□□□ 0.4
SNX17-204ENST00000453453 HSPA6P17066 643 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 HOXD10P28358 340 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 CTGFP29279 349 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 TBX2Q13207 712 aaPredicted RBP17.52■□□□□ 0.4
SNX17-204ENST00000453453 CUL4BQ13620 913 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 ARHGEF6Q15052 776 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 CELF3Q5SZQ8 465 aaKnown RBP17.52■□□□□ 0.4
SNX17-204ENST00000453453 NT5DC1Q5TFE4 455 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 TAPT1Q6NXT6 567 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 CCDC62Q6P9F0 684 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 RSRC2Q7L4I2 434 aaKnown RBP17.52■□□□□ 0.4
SNX17-204ENST00000453453 TRMT44Q8IYL2 757 aaKnown RBP17.52■□□□□ 0.4
SNX17-204ENST00000453453 LRRC15Q8TF66 581 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 BEGAINQ9BUH8 593 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 ARHGAP39Q9C0H5 1083 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 HSD3B7Q9H2F3 369 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 BLZF1Q9H2G9 400 aa17.52■□□□□ 0.4
SNX17-204ENST00000453453 BIN1O00499 593 aa17.51■□□□□ 0.39
SNX17-204ENST00000453453 NKRFO15226 690 aaKnown RBP eCLIP17.51■□□□□ 0.39
SNX17-204ENST00000453453 LYPLA2O95372 231 aa17.51■□□□□ 0.39
SNX17-204ENST00000453453 ARIH2O95376 493 aa17.51■□□□□ 0.39
SNX17-204ENST00000453453 GH1P01241 217 aa17.51■□□□□ 0.39
SNX17-204ENST00000453453 KRT18P05783 430 aaKnown RBP17.51■□□□□ 0.39
SNX17-204ENST00000453453 ASIC1P78348 528 aa17.51■□□□□ 0.39
SNX17-204ENST00000453453 BRD3Q15059 726 aa17.51■□□□□ 0.39
SNX17-204ENST00000453453 FAM160B1Q5W0V3 765 aa17.51■□□□□ 0.39
SNX17-204ENST00000453453 CC2D1AQ6P1N0 951 aaPredicted RBP17.51■□□□□ 0.39
SNX17-204ENST00000453453 ABHD15Q6UXT9 468 aa17.51■□□□□ 0.39
SNX17-204ENST00000453453 GPBP1Q86WP2 473 aa17.51■□□□□ 0.39
SNX17-204ENST00000453453 MTRQ99707 1265 aa17.51■□□□□ 0.39
SNX17-204ENST00000453453 KATNBL1Q9H079 304 aa17.51■□□□□ 0.39
SNX17-204ENST00000453453 PDGFCQ9NRA1 345 aa17.51■□□□□ 0.39
SNX17-204ENST00000453453 CWC15Q9P013 229 aaKnown RBP17.51■□□□□ 0.39
SNX17-204ENST00000453453 GABBR1Q9UBS5 961 aa17.51■□□□□ 0.39
SNX17-204ENST00000453453 DACH1Q9UI36 760 aa17.51■□□□□ 0.39
SNX17-204ENST00000453453 GPR25O00155 361 aa17.5■□□□□ 0.39
SNX17-204ENST00000453453 URI1O94763 535 aaPredicted RBP17.5■□□□□ 0.39
SNX17-204ENST00000453453 RPN1P04843 607 aaKnown RBP17.5■□□□□ 0.39
SNX17-204ENST00000453453 CASQ1P31415 396 aa17.5■□□□□ 0.39
SNX17-204ENST00000453453 MAP2K1Q02750 393 aaPredicted RBP17.5■□□□□ 0.39
SNX17-204ENST00000453453 LAMC2Q13753 1193 aa17.5■□□□□ 0.39
SNX17-204ENST00000453453 CT47A1Q5JQC4 288 aaPredicted RBP17.5■□□□□ 0.39
SNX17-204ENST00000453453 IQSEC1Q6DN90 963 aa17.5■□□□□ 0.39
SNX17-204ENST00000453453 TMEM139Q8IV31 216 aa17.5■□□□□ 0.39
SNX17-204ENST00000453453 C4orf19Q8IY42 314 aa17.5■□□□□ 0.39
SNX17-204ENST00000453453 SYT2Q8N9I0 419 aaPredicted RBP17.5■□□□□ 0.39
SNX17-204ENST00000453453 SPATA20Q8TB22 786 aa17.5■□□□□ 0.39
SNX17-204ENST00000453453 SEPT1Q8WYJ6 367 aa17.5■□□□□ 0.39
SNX17-204ENST00000453453 EXOC4Q96A65 974 aa17.5■□□□□ 0.39
SNX17-204ENST00000453453 TRIM9Q9C026 710 aa17.5■□□□□ 0.39
SNX17-204ENST00000453453 BHMT2Q9H2M3 363 aa17.5■□□□□ 0.39
SNX17-204ENST00000453453 BCAS3Q9H6U6 928 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms