RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 FAM167AQ96KS9 214 aa22.42■■□□□ 1.18
COL9A3-202ENST00000452372 TTC12Q9H892 705 aaPredicted RBP22.42■■□□□ 1.18
COL9A3-202ENST00000452372 NRBP2Q9NSY0 501 aa22.42■■□□□ 1.18
COL9A3-202ENST00000452372 FOXD4L1Q9NU39 408 aa22.42■■□□□ 1.18
COL9A3-202ENST00000452372 CAND2O75155 1236 aa22.41■■□□□ 1.18
COL9A3-202ENST00000452372 PARNO95453 639 aaKnown RBP22.41■■□□□ 1.18
COL9A3-202ENST00000452372 THPOP40225 353 aa22.41■■□□□ 1.18
COL9A3-202ENST00000452372 RILPL1Q5EBL4 403 aa22.41■■□□□ 1.18
COL9A3-202ENST00000452372 ZNF618Q5T7W0 954 aa22.41■■□□□ 1.18
COL9A3-202ENST00000452372 LRRC8DQ7L1W4 858 aa22.41■■□□□ 1.18
COL9A3-202ENST00000452372 RPAINQ86UA6 219 aa22.41■■□□□ 1.18
COL9A3-202ENST00000452372 C4orf32Q8N8J7 132 aa22.41■■□□□ 1.18
COL9A3-202ENST00000452372 TRAPPC12Q8WVT3 735 aa22.41■■□□□ 1.18
COL9A3-202ENST00000452372 GAS2L1Q99501 681 aaPredicted RBP22.41■■□□□ 1.18
COL9A3-202ENST00000452372 PTPRSQ13332 1948 aa22.41■■□□□ 1.18
COL9A3-202ENST00000452372 ZBTB42B2RXF5 422 aa22.4■■□□□ 1.18
COL9A3-202ENST00000452372 OATP04181 439 aa22.4■■□□□ 1.18
COL9A3-202ENST00000452372 SYT1P21579 422 aa22.4■■□□□ 1.18
COL9A3-202ENST00000452372 PRKCEQ02156 737 aa22.4■■□□□ 1.18
COL9A3-202ENST00000452372 NBR1Q14596 966 aa22.4■■□□□ 1.18
COL9A3-202ENST00000452372 TCTN1Q2MV58 587 aa22.4■■□□□ 1.18
COL9A3-202ENST00000452372 TRAF7Q6Q0C0 670 aa22.4■■□□□ 1.18
COL9A3-202ENST00000452372 RUFY4Q6ZNE9 571 aa22.4■■□□□ 1.18
COL9A3-202ENST00000452372 PCDHB6Q9Y5E3 794 aa22.4■■□□□ 1.18
COL9A3-202ENST00000452372 PCDHA2Q9Y5H9 948 aa22.4■■□□□ 1.18
COL9A3-202ENST00000452372 PRRC2BQ5JSZ5 2229 aaKnown RBP22.39■■□□□ 1.18
COL9A3-202ENST00000452372 P4HBP07237 508 aaKnown RBP22.39■■□□□ 1.17
COL9A3-202ENST00000452372 OR52Z1P0C646 297 aa22.39■■□□□ 1.17
COL9A3-202ENST00000452372 QARSP47897 775 aaKnown RBP22.39■■□□□ 1.17
COL9A3-202ENST00000452372 PSMC5P62195 406 aa22.39■■□□□ 1.17
COL9A3-202ENST00000452372 XKR3Q5GH77 459 aa22.39■■□□□ 1.17
COL9A3-202ENST00000452372 NCAPH2Q6IBW4 605 aa22.39■■□□□ 1.17
COL9A3-202ENST00000452372 MTHFD1LQ6UB35 978 aa22.39■■□□□ 1.17
COL9A3-202ENST00000452372 TRMT1LQ7Z2T5 733 aaKnown RBP22.39■■□□□ 1.17
COL9A3-202ENST00000452372 BANK1Q8NDB2 785 aa22.39■■□□□ 1.17
COL9A3-202ENST00000452372 PHOSPHO2Q8TCD6 241 aa22.39■■□□□ 1.17
COL9A3-202ENST00000452372 FTOQ9C0B1 505 aaKnown RBP eCLIP22.39■■□□□ 1.17
COL9A3-202ENST00000452372 CEP131Q9UPN4 1083 aa22.39■■□□□ 1.17
COL9A3-202ENST00000452372 NCOR1O75376 2440 aa22.39■■□□□ 1.17
COL9A3-202ENST00000452372 VPS37CA5D8V6 355 aaPredicted RBP22.38■■□□□ 1.17
COL9A3-202ENST00000452372 RSPH10B2B2RC85 870 aa22.38■■□□□ 1.17
COL9A3-202ENST00000452372 DKC1O60832 514 aaKnown RBP eCLIP22.38■■□□□ 1.17
COL9A3-202ENST00000452372 ARHGEF15O94989 841 aa22.38■■□□□ 1.17
COL9A3-202ENST00000452372 STBD1O95210 358 aa22.38■■□□□ 1.17
COL9A3-202ENST00000452372 RPLP2P05387 115 aaKnown RBP22.38■■□□□ 1.17
COL9A3-202ENST00000452372 RSPH10BP0C881 870 aa22.38■■□□□ 1.17
COL9A3-202ENST00000452372 ACTN1P12814 892 aa22.38■■□□□ 1.17
COL9A3-202ENST00000452372 KLRC1P26715 233 aa22.38■■□□□ 1.17
COL9A3-202ENST00000452372 BRAPQ7Z569 592 aa22.38■■□□□ 1.17
COL9A3-202ENST00000452372 RSPH3Q86UC2 560 aa22.38■■□□□ 1.17
COL9A3-202ENST00000452372 ZBTB10Q96DT7 871 aa22.38■■□□□ 1.17
COL9A3-202ENST00000452372 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.38■■□□□ 1.17
COL9A3-202ENST00000452372 EVPLQ92817 2033 aa22.38■■□□□ 1.17
COL9A3-202ENST00000452372 SMIM35A0A1B0GVV1 85 aa22.37■■□□□ 1.17
COL9A3-202ENST00000452372 NBNO60934 754 aa22.37■■□□□ 1.17
COL9A3-202ENST00000452372 CXCL10P02778 98 aa22.37■■□□□ 1.17
COL9A3-202ENST00000452372 PTGDRQ13258 359 aa22.37■■□□□ 1.17
COL9A3-202ENST00000452372 FAM26DQ5JW98 314 aa22.37■■□□□ 1.17
COL9A3-202ENST00000452372 PPP2R2DQ66LE6 453 aa22.37■■□□□ 1.17
COL9A3-202ENST00000452372 DNAJB3Q8WWF6 145 aa22.37■■□□□ 1.17
COL9A3-202ENST00000452372 PPM1EQ8WY54 764 aa22.37■■□□□ 1.17
COL9A3-202ENST00000452372 NIFKQ9BYG3 293 aaKnown RBP22.37■■□□□ 1.17
COL9A3-202ENST00000452372 LAD1O00515 517 aa22.36■■□□□ 1.17
COL9A3-202ENST00000452372 CA3P07451 260 aa22.36■■□□□ 1.17
COL9A3-202ENST00000452372 HSP90AA1P07900 732 aaKnown RBP22.36■■□□□ 1.17
COL9A3-202ENST00000452372 MBTPS1Q14703 1052 aa22.36■■□□□ 1.17
COL9A3-202ENST00000452372 HERC6Q8IVU3 1022 aa22.36■■□□□ 1.17
COL9A3-202ENST00000452372 DYDC2Q96IM9 177 aa22.36■■□□□ 1.17
COL9A3-202ENST00000452372 SLC9A7Q96T83 725 aa22.36■■□□□ 1.17
COL9A3-202ENST00000452372 HSD17B14Q9BPX1 270 aa22.36■■□□□ 1.17
COL9A3-202ENST00000452372 EIF2AK1Q9BQI3 630 aaKnown RBP22.36■■□□□ 1.17
COL9A3-202ENST00000452372 RGL1Q9NZL6 768 aa22.36■■□□□ 1.17
COL9A3-202ENST00000452372 MUC3AQ02505 3323 aa22.36■■□□□ 1.17
COL9A3-202ENST00000452372 DDX11L8A8MPP1 907 aa22.35■■□□□ 1.17
COL9A3-202ENST00000452372 RFXAPO00287 272 aa22.35■■□□□ 1.17
COL9A3-202ENST00000452372 MAGEB2O15479 319 aa22.35■■□□□ 1.17
COL9A3-202ENST00000452372 SLITRK3O94933 977 aa22.35■■□□□ 1.17
COL9A3-202ENST00000452372 C22orf31O95567 290 aa22.35■■□□□ 1.17
COL9A3-202ENST00000452372 CTSHP09668 335 aa22.35■■□□□ 1.17
COL9A3-202ENST00000452372 IGFBP4P22692 258 aa22.35■■□□□ 1.17
COL9A3-202ENST00000452372 TECP42680 631 aa22.35■■□□□ 1.17
COL9A3-202ENST00000452372 TARBP2Q15633 366 aaKnown RBP22.35■■□□□ 1.17
COL9A3-202ENST00000452372 CCDC85BQ15834 202 aaPredicted RBP22.35■■□□□ 1.17
COL9A3-202ENST00000452372 FERMT3Q86UX7 667 aa22.35■■□□□ 1.17
COL9A3-202ENST00000452372 C4orf19Q8IY42 314 aa22.35■■□□□ 1.17
COL9A3-202ENST00000452372 NME8Q8N427 588 aa22.35■■□□□ 1.17
COL9A3-202ENST00000452372 LXNQ9BS40 222 aa22.35■■□□□ 1.17
COL9A3-202ENST00000452372 FAM49AQ9H0Q0 323 aaPredicted RBP22.35■■□□□ 1.17
COL9A3-202ENST00000452372 ZSWIM4Q9H7M6 989 aa22.35■■□□□ 1.17
COL9A3-202ENST00000452372 WRAP73Q9P2S5 460 aaPredicted RBP22.35■■□□□ 1.17
COL9A3-202ENST00000452372 MTMR6Q9Y217 621 aa22.35■■□□□ 1.17
COL9A3-202ENST00000452372 EPOPA6NHQ4 379 aa22.34■■□□□ 1.17
COL9A3-202ENST00000452372 POTEMA6NI47 508 aa22.34■■□□□ 1.17
COL9A3-202ENST00000452372 STX6O43752 255 aa22.34■■□□□ 1.17
COL9A3-202ENST00000452372 BAIAP3O94812 1187 aa22.34■■□□□ 1.17
COL9A3-202ENST00000452372 CHRNA1P02708 482 aa22.34■■□□□ 1.17
COL9A3-202ENST00000452372 FXR2P51116 673 aaKnown RBP eCLIP22.34■■□□□ 1.17
COL9A3-202ENST00000452372 CYP4A11Q02928 519 aa22.34■■□□□ 1.17
COL9A3-202ENST00000452372 ANO5Q75V66 913 aa22.34■■□□□ 1.17
COL9A3-202ENST00000452372 NEK9Q8TD19 979 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms