RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 YEATS2Q9ULM3 1422 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 ERVK-7P63135 1459 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 ZBBXA8MT70 800 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 CREB3O43889 395 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 PLEKHA8P1O95397 391 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 CHEK2O96017 543 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 SPOUT1Q5T280 376 aaKnown RBP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 MIS18BP1Q6P0N0 1132 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 RNF207Q6ZRF8 634 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 TRIM67Q6ZTA4 783 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 ERICH1Q86X53 443 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 C7orf31Q8N865 590 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 TTC13Q8NBP0 860 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 GIPC2Q8TF65 315 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 FAM193BQ96PV7 902 aaPredicted RBP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 APOL6Q9BWW8 343 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 TRIM15Q9C019 465 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 KLC2Q9H0B6 622 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 TAF1DQ9H5J8 278 aaPredicted RBP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 SEC31BQ9NQW1 1179 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 ZCCHC11Q5TAX3 1644 aaKnown RBP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 TMEM2Q9UHN6 1383 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 LOC102724428A0A0B4J2F2 783 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 PNMA6FA0A0J9YX94 578 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 ESYT3A0FGR9 886 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 WDR64B1ANS9 1081 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 BRAFP15056 766 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 PRCPP42785 496 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 SIK1P57059 783 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 GPC5P78333 572 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 MYO1EQ12965 1108 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 TSTA3Q13630 321 aaPredicted RBP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 UBE2SQ16763 222 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 TAF1BQ53T94 588 aaPredicted RBP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 HP1BP3Q5SSJ5 553 aaPredicted RBP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 KRT39Q6A163 491 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 NFRKBQ6P4R8 1299 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 CHMP6Q96FZ7 201 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 TTC1Q99614 292 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 PIH1D3Q9NQM4 214 aaKnown RBP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 ADAM22Q9P0K1 906 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 ZBTB1Q9Y2K1 713 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 CYP2D7A0A087X1C5 515 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 USP17L8P0C7I0 530 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 TFDP2Q14188 446 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 KLHL38Q2WGJ6 581 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 FAM83BQ5T0W9 1011 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 C1orf146Q5VVC0 180 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 USPL1Q5W0Q7 1092 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 KLC3Q6P597 504 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 FBXL13Q8NEE6 735 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 DYDC2Q96IM9 177 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 EPC1Q9H2F5 836 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 ETNK1Q9HBU6 452 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 MAGED2Q9UNF1 606 aaPredicted RBP8.33□□□□□ -1.08
NEDD9-204ENST00000448183 SYNMO15061 1565 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 TTC26A0AVF1 554 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 CASP1P29466 404 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 SYDE2Q5VT97 1194 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 PARP9Q8IXQ6 854 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 ZC3H15Q8WU90 426 aaKnown RBP8.33□□□□□ -1.08
NEDD9-204ENST00000448183 DDX17Q92841 729 aaKnown RBP8.33□□□□□ -1.08
NEDD9-204ENST00000448183 FAF2Q96CS3 445 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 DDX47Q9H0S4 455 aaKnown RBP8.33□□□□□ -1.08
NEDD9-204ENST00000448183 TARSL2A2RTX5 802 aaKnown RBP8.33□□□□□ -1.08
NEDD9-204ENST00000448183 FAM187AA6NFU0 413 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 PSMA2P25787 234 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 CHRNA3P32297 505 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 GFPT1Q06210 699 aaPredicted RBP8.33□□□□□ -1.08
NEDD9-204ENST00000448183 DYNC1I2Q13409 638 aaKnown RBP8.33□□□□□ -1.08
NEDD9-204ENST00000448183 RASGRF1Q13972 1273 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 DHX38Q92620 1227 aaKnown RBP8.33□□□□□ -1.08
NEDD9-204ENST00000448183 DYNLL2Q96FJ2 89 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.33□□□□□ -1.088e-8■■□□□ 12.3
NEDD9-204ENST00000448183 DHX36Q9H2U1 1008 aaKnown RBP8.33□□□□□ -1.08
NEDD9-204ENST00000448183 SLITRK6Q9H5Y7 841 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 WDR19Q8NEZ3 1342 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 GOLGA8IPA6NC78 632 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 GOLGA8JA6NMD2 632 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 LPXNO60711 386 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 PDHA1P08559 390 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 CRKLP46109 303 aaKnown RBP8.33□□□□□ -1.08
NEDD9-204ENST00000448183 STAT2P52630 851 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 CDR2Q01850 454 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 OCA2Q04671 838 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 NLRP10Q86W26 655 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 SLC24A3Q9HC58 644 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 SUN2Q9UH99 717 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 AKT3Q9Y243 479 aa8.33□□□□□ -1.08
NEDD9-204ENST00000448183 PRAMEF22A3QJZ6 481 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 USP17L3A6NCW0 530 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 USP17L4A6NCW7 530 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 TEX33O43247 280 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 RCAN1P53805 252 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 KCNH2Q12809 1159 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 KCTD2Q14681 263 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 MTERF2Q49AM1 385 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 TBC1D9BQ66K14 1250 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 CC2D2BQ6DHV5 1058 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms