RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CD58P19256 250 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 PPM1FP49593 454 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-213ENST00000448038 GTF2A2P52657 109 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 UBLCP1Q8WVY7 318 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-213ENST00000448038 MAIP1Q8WWC4 291 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 C2orf40Q9H1Z8 148 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 TXNDC16Q9P2K2 825 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 GAKO14976 1311 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 PHLPP2Q6ZVD8 1323 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 VCAM1P19320 739 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 CYP2B6P20813 491 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 PPP1R14CQ8TAE6 165 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 BPIFA3Q9BQP9 254 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 FAM213AQ9BRX8 229 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 AGXT2Q9BYV1 514 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 PRKAG2Q9UGJ0 569 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 HYOU1Q9Y4L1 999 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 DLG5Q8TDM6 1919 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 NPHP3-ACAD11A0A0J9YXS1 232 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 SEMA3FQ13275 785 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 KCNB1Q14721 858 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 XKR3Q5GH77 459 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 CFAP58Q5T655 872 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 METTL23Q86XA0 190 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 GPR161Q8N6U8 529 aaKnown RBP8.04□□□□□ -1.12
SYNE1-213ENST00000448038 RAET1EQ8TD07 263 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 SEPT1Q8WYJ6 367 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 STMN4Q9H169 189 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-213ENST00000448038 GBA2Q9HCG7 927 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-213ENST00000448038 RAB20Q9NX57 234 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 HAUS6Q7Z4H7 955 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 NBPF11Q86T75 865 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 IFT20Q8IY31 132 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 PABPN1LA6NDY0 278 aaKnown RBP8.04□□□□□ -1.12
SYNE1-213ENST00000448038 LGALS16A8MUM7 142 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 MYO1FO00160 1098 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 RNF8O76064 485 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 GAS8O95995 478 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 RHBDL3P58872 404 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 FKBP1CQ5VVH2 108 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 SCARA5Q6ZMJ2 495 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 RIT2Q99578 217 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 PAIP2Q9BPZ3 127 aaKnown RBP8.04□□□□□ -1.12
SYNE1-213ENST00000448038 KCNH7Q9NS40 1196 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 PPP1R9AQ9ULJ8 1098 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 FAM169AQ9Y6X4 670 aa8.04□□□□□ -1.12
SYNE1-213ENST00000448038 MAFGO15525 162 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 DYNC1LI2O43237 492 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-213ENST00000448038 EIF4A3P38919 411 aaKnown RBP8.03□□□□□ -1.12
SYNE1-213ENST00000448038 GCLMP48507 274 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 TNFAIP2Q03169 654 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 KRT81Q14533 505 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 NTRK3Q16288 839 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 MAP1SQ66K74 1059 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-213ENST00000448038 TWF2Q6IBS0 349 aaKnown RBP8.03□□□□□ -1.12
SYNE1-213ENST00000448038 SARM1Q6SZW1 724 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 KRT222Q8N1A0 295 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-213ENST00000448038 ZNF653Q96CK0 615 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 CCDC97Q96F63 343 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-213ENST00000448038 MRIQ9BWK5 157 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 KCNH2Q12809 1159 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 MESDQ14696 234 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 CCDC14Q49A88 953 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 XRRA1Q6P2D8 792 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 HPS3Q969F9 1004 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 RIOX1Q9H6W3 641 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 SSX2IPQ9Y2D8 614 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 TOPAZ1Q8N9V7 1692 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 SOWAHDA6NJG2 315 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 SERPING1P05155 500 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 NMT1P30419 496 aaKnown RBP8.03□□□□□ -1.12
SYNE1-213ENST00000448038 MRPL4Q9BYD3 311 aaKnown RBP8.03□□□□□ -1.12
SYNE1-213ENST00000448038 FAM107BQ9H098 131 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 TOPORSQ9NS56 1045 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-213ENST00000448038 SLIT2O94813 1529 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 DGAT1O75907 488 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 GH1P01241 217 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 TCP1P17987 556 aaKnown RBP8.03□□□□□ -1.12
SYNE1-213ENST00000448038 SREBF2Q12772 1141 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 FBXL16Q8N461 479 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 PPP1R13BQ96KQ4 1090 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 SMARCAD1Q9H4L7 1026 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 NHEJ1Q9H9Q4 299 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-213ENST00000448038 FAM198AQ9UFP1 575 aa8.03□□□□□ -1.12
SYNE1-213ENST00000448038 ADM5C9JUS6 153 aa8.02□□□□□ -1.12
SYNE1-213ENST00000448038 FXR2P51116 673 aaKnown RBP eCLIP8.02□□□□□ -1.12
SYNE1-213ENST00000448038 EHHADHQ08426 723 aa8.02□□□□□ -1.12
SYNE1-213ENST00000448038 WHAMMP3Q1A5X7 153 aa8.02□□□□□ -1.12
SYNE1-213ENST00000448038 TRIM11Q96F44 468 aa8.02□□□□□ -1.12
SYNE1-213ENST00000448038 RRAGCQ9HB90 399 aa8.02□□□□□ -1.12
SYNE1-213ENST00000448038 MED7O43513 233 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 SLC37A4O43826 429 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 BFSP1Q12934 665 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 ELF2Q15723 593 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 ZNF667Q5HYK9 610 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 SND1Q7KZF4 910 aaKnown RBP eCLIP8.02□□□□□ -1.13
SYNE1-213ENST00000448038 HDXQ7Z353 690 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 SMAP1Q8IYB5 467 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-213ENST00000448038 CCDC170Q8IYT3 715 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms