RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 NIFKQ9BYG3 293 aaKnown RBP23.04■■□□□ 1.28
CHD3-204ENST00000439235 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.04■■□□□ 1.28
CHD3-204ENST00000439235 GZF1Q9H116 711 aaPredicted RBP23.04■■□□□ 1.28
CHD3-204ENST00000439235 BLZF1Q9H2G9 400 aa23.04■■□□□ 1.28
CHD3-204ENST00000439235 LOXHD1Q8IVV2 1947 aa23.04■■□□□ 1.28
CHD3-204ENST00000439235 H3BRB1 525 aa23.03■■□□□ 1.28
CHD3-204ENST00000439235 HBP1O60381 514 aa23.03■■□□□ 1.28
CHD3-204ENST00000439235 ADAMTS4O75173 837 aa23.03■■□□□ 1.28
CHD3-204ENST00000439235 PGK1P00558 417 aa23.03■■□□□ 1.28
CHD3-204ENST00000439235 F2P00734 622 aa23.03■■□□□ 1.28
CHD3-204ENST00000439235 MYL3P08590 195 aa23.03■■□□□ 1.28
CHD3-204ENST00000439235 CST5P28325 142 aaPredicted RBP23.03■■□□□ 1.28
CHD3-204ENST00000439235 ASIC1P78348 528 aa23.03■■□□□ 1.28
CHD3-204ENST00000439235 BEX3Q00994 111 aa23.03■■□□□ 1.28
CHD3-204ENST00000439235 CUL4BQ13620 913 aa23.03■■□□□ 1.28
CHD3-204ENST00000439235 GNASQ5JWF2 1037 aa23.03■■□□□ 1.28
CHD3-204ENST00000439235 TRMT1LQ7Z2T5 733 aaKnown RBP23.03■■□□□ 1.28
CHD3-204ENST00000439235 DDX12PQ92771 950 aa23.03■■□□□ 1.28
CHD3-204ENST00000439235 CCDC47Q96A33 483 aaKnown RBP23.03■■□□□ 1.28
CHD3-204ENST00000439235 KATNAL1Q9BW62 490 aa23.03■■□□□ 1.28
CHD3-204ENST00000439235 TUT1Q9H6E5 874 aaKnown RBP23.03■■□□□ 1.28
CHD3-204ENST00000439235 TRPC6Q9Y210 931 aa23.03■■□□□ 1.28
CHD3-204ENST00000439235 RINT1Q6NUQ1 792 aa23.02■■□□□ 1.28
CHD3-204ENST00000439235 PADI6Q6TGC4 694 aa23.02■■□□□ 1.28
CHD3-204ENST00000439235 RNF180Q86T96 592 aa23.02■■□□□ 1.28
CHD3-204ENST00000439235 GSDMAQ96QA5 445 aa23.02■■□□□ 1.28
CHD3-204ENST00000439235 RUSC1Q9BVN2 902 aa23.02■■□□□ 1.28
CHD3-204ENST00000439235 TIPINQ9BVW5 301 aa23.02■■□□□ 1.28
CHD3-204ENST00000439235 CYP26B1Q9NR63 512 aa23.02■■□□□ 1.28
CHD3-204ENST00000439235 RMND1Q9NWS8 449 aa23.02■■□□□ 1.28
CHD3-204ENST00000439235 TUBE1Q9UJT0 475 aa23.02■■□□□ 1.28
CHD3-204ENST00000439235 PCDHA5Q9Y5H7 936 aa23.02■■□□□ 1.28
CHD3-204ENST00000439235 SYCE3A1L190 88 aa23.01■■□□□ 1.27
CHD3-204ENST00000439235 TMEM150BA6NC51 233 aa23.01■■□□□ 1.27
CHD3-204ENST00000439235 MYADML2A6NDP7 307 aa23.01■■□□□ 1.27
CHD3-204ENST00000439235 GUCY2CP25092 1073 aa23.01■■□□□ 1.27
CHD3-204ENST00000439235 CASP1P29466 404 aa23.01■■□□□ 1.27
CHD3-204ENST00000439235 NPEPPSP55786 919 aa23.01■■□□□ 1.27
CHD3-204ENST00000439235 MTERF2Q49AM1 385 aa23.01■■□□□ 1.27
CHD3-204ENST00000439235 NT5DC1Q5TFE4 455 aa23.01■■□□□ 1.27
CHD3-204ENST00000439235 SASS6Q6UVJ0 657 aa23.01■■□□□ 1.27
CHD3-204ENST00000439235 C1orf186Q6ZWK4 172 aa23.01■■□□□ 1.27
CHD3-204ENST00000439235 SPATA20Q8TB22 786 aa23.01■■□□□ 1.27
CHD3-204ENST00000439235 ERCC4Q92889 916 aaPredicted RBP23.01■■□□□ 1.27
CHD3-204ENST00000439235 PVALEFA0A1B0GWK0 134 aa23■■□□□ 1.27
CHD3-204ENST00000439235 USO1O60763 962 aaKnown RBP23■■□□□ 1.27
CHD3-204ENST00000439235 TBCAO75347 108 aaKnown RBP23■■□□□ 1.27
CHD3-204ENST00000439235 DGAT1O75907 488 aa23■■□□□ 1.27
CHD3-204ENST00000439235 RPN1P04843 607 aaKnown RBP23■■□□□ 1.27
CHD3-204ENST00000439235 RFC5P40937 340 aa23■■□□□ 1.27
CHD3-204ENST00000439235 IRX5P78411 483 aaPredicted RBP23■■□□□ 1.27
CHD3-204ENST00000439235 PURAQ00577 322 aaKnown RBP23■■□□□ 1.27
CHD3-204ENST00000439235 ARSHQ5FYA8 562 aa23■■□□□ 1.27
CHD3-204ENST00000439235 UNC13DQ70J99 1090 aa23■■□□□ 1.27
CHD3-204ENST00000439235 DYMQ7RTS9 669 aa23■■□□□ 1.27
CHD3-204ENST00000439235 CCDC65Q8IXS2 484 aa23■■□□□ 1.27
CHD3-204ENST00000439235 EXOC8Q8IYI6 725 aa23■■□□□ 1.27
CHD3-204ENST00000439235 PCSK9Q8NBP7 692 aaKnown RBP23■■□□□ 1.27
CHD3-204ENST00000439235 KLHDC9Q8NEP7 349 aa23■■□□□ 1.27
CHD3-204ENST00000439235 MTG1Q9BT17 334 aaPredicted RBP23■■□□□ 1.27
CHD3-204ENST00000439235 UNC93B1Q9H1C4 597 aa23■■□□□ 1.27
CHD3-204ENST00000439235 ODF2LQ9ULJ1 636 aa23■■□□□ 1.27
CHD3-204ENST00000439235 COL1A2P08123 1366 aa23■■□□□ 1.27
CHD3-204ENST00000439235 IDEP14735 1019 aa22.99■■□□□ 1.27
CHD3-204ENST00000439235 SARSP49591 514 aaKnown RBP22.99■■□□□ 1.27
CHD3-204ENST00000439235 PSEN2P49810 448 aa22.99■■□□□ 1.27
CHD3-204ENST00000439235 KCNB1Q14721 858 aa22.99■■□□□ 1.27
CHD3-204ENST00000439235 MFSD10Q14728 455 aa22.99■■□□□ 1.27
CHD3-204ENST00000439235 TARBP2Q15633 366 aaKnown RBP22.99■■□□□ 1.27
CHD3-204ENST00000439235 ZNF484Q5JVG2 852 aa22.99■■□□□ 1.27
CHD3-204ENST00000439235 LHX8Q68G74 356 aa22.99■■□□□ 1.27
CHD3-204ENST00000439235 TRIML1Q8N9V2 468 aa22.99■■□□□ 1.27
CHD3-204ENST00000439235 DNAJC19Q96DA6 116 aa22.99■■□□□ 1.27
CHD3-204ENST00000439235 ATP6V0A4Q9HBG4 840 aa22.99■■□□□ 1.27
CHD3-204ENST00000439235 EXOC1Q9NV70 894 aa22.99■■□□□ 1.27
CHD3-204ENST00000439235 CCL5P13501 91 aa22.98■■□□□ 1.27
CHD3-204ENST00000439235 POLGP54098 1239 aaPredicted RBP22.98■■□□□ 1.27
CHD3-204ENST00000439235 GIT2Q14161 759 aa22.98■■□□□ 1.27
CHD3-204ENST00000439235 MCPH1Q8NEM0 835 aa22.98■■□□□ 1.27
CHD3-204ENST00000439235 SLC7A3Q8WY07 619 aa22.98■■□□□ 1.27
CHD3-204ENST00000439235 KAT2BQ92831 832 aa22.98■■□□□ 1.27
CHD3-204ENST00000439235 JPH2Q9BR39 696 aaPredicted RBP22.98■■□□□ 1.27
CHD3-204ENST00000439235 SH2D3AQ9BRG2 576 aa22.98■■□□□ 1.27
CHD3-204ENST00000439235 REEP2Q9BRK0 252 aa22.98■■□□□ 1.27
CHD3-204ENST00000439235 GTPBP4Q9BZE4 634 aaKnown RBP22.98■■□□□ 1.27
CHD3-204ENST00000439235 RNPEPQ9H4A4 650 aa22.98■■□□□ 1.27
CHD3-204ENST00000439235 PAK6Q9NQU5 681 aaPredicted RBP22.98■■□□□ 1.27
CHD3-204ENST00000439235 CCDC85CA6NKD9 419 aa22.97■■□□□ 1.27
CHD3-204ENST00000439235 HAS3O00219 553 aa22.97■■□□□ 1.27
CHD3-204ENST00000439235 KLRC4O43908 158 aa22.97■■□□□ 1.27
CHD3-204ENST00000439235 FAM13AO94988 1023 aa22.97■■□□□ 1.27
CHD3-204ENST00000439235 MYCNP04198 464 aaPredicted RBP22.97■■□□□ 1.27
CHD3-204ENST00000439235 CCDC192P0DO97 292 aa22.97■■□□□ 1.27
CHD3-204ENST00000439235 ZNF445P59923 1031 aa22.97■■□□□ 1.27
CHD3-204ENST00000439235 RAD51AP2Q09MP3 1159 aa22.97■■□□□ 1.27
CHD3-204ENST00000439235 TBC1D8BQ0IIM8 1120 aa22.97■■□□□ 1.27
CHD3-204ENST00000439235 LRRC41Q15345 812 aa22.97■■□□□ 1.27
CHD3-204ENST00000439235 KIAA0753Q2KHM9 967 aa22.97■■□□□ 1.27
CHD3-204ENST00000439235 ARRDC4Q8NCT1 418 aa22.97■■□□□ 1.27
CHD3-204ENST00000439235 MAN1B1Q9UKM7 699 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms