RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 POTEDQ86YR6 584 aa17.1■□□□□ 0.33
LIMS3-201ENST00000437679 SLFN12Q8IYM2 578 aa17.1■□□□□ 0.33
LIMS3-201ENST00000437679 KIF3AQ9Y496 699 aa17.1■□□□□ 0.33
LIMS3-201ENST00000437679 C22orf31O95567 290 aa17.09■□□□□ 0.33
LIMS3-201ENST00000437679 GNL2Q13823 731 aaKnown RBP17.09■□□□□ 0.33
LIMS3-201ENST00000437679 FBXO47Q5MNV8 452 aa17.09■□□□□ 0.33
LIMS3-201ENST00000437679 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.09■□□□□ 0.33
LIMS3-201ENST00000437679 TSHZ1Q6ZSZ6 1077 aa17.09■□□□□ 0.33
LIMS3-201ENST00000437679 MYOCDQ8IZQ8 938 aa17.09■□□□□ 0.33
LIMS3-201ENST00000437679 METTL13Q8N6R0 699 aa17.09■□□□□ 0.33
LIMS3-201ENST00000437679 USP38Q8NB14 1042 aa17.09■□□□□ 0.33
LIMS3-201ENST00000437679 FBXO18Q8NFZ0 1043 aa17.09■□□□□ 0.33
LIMS3-201ENST00000437679 MYLIPQ8WY64 445 aa17.09■□□□□ 0.33
LIMS3-201ENST00000437679 HAS1Q92839 578 aa17.09■□□□□ 0.33
LIMS3-201ENST00000437679 TMX3Q96JJ7 454 aa17.09■□□□□ 0.33
LIMS3-201ENST00000437679 CELF4Q9BZC1 486 aaKnown RBP17.09■□□□□ 0.33
LIMS3-201ENST00000437679 VAV3Q9UKW4 847 aa17.09■□□□□ 0.33
LIMS3-201ENST00000437679 SQORQ9Y6N5 450 aa17.09■□□□□ 0.33
LIMS3-201ENST00000437679 PTPRSQ13332 1948 aa17.09■□□□□ 0.33
LIMS3-201ENST00000437679 SIP14410 1827 aa17.08■□□□□ 0.33
LIMS3-201ENST00000437679 DKC1O60832 514 aaKnown RBP eCLIP17.08■□□□□ 0.32
LIMS3-201ENST00000437679 GJB5O95377 273 aa17.08■□□□□ 0.32
LIMS3-201ENST00000437679 CA3P07451 260 aa17.08■□□□□ 0.32
LIMS3-201ENST00000437679 FOSL2P15408 326 aa17.08■□□□□ 0.32
LIMS3-201ENST00000437679 PSMC5P62195 406 aa17.08■□□□□ 0.32
LIMS3-201ENST00000437679 CALCRLQ16602 461 aa17.08■□□□□ 0.32
LIMS3-201ENST00000437679 XKR3Q5GH77 459 aa17.08■□□□□ 0.32
LIMS3-201ENST00000437679 TMCO2Q7Z6W1 182 aaPredicted RBP17.08■□□□□ 0.32
LIMS3-201ENST00000437679 KIAA0319LQ8IZA0 1049 aa17.08■□□□□ 0.32
LIMS3-201ENST00000437679 BANK1Q8NDB2 785 aa17.08■□□□□ 0.32
LIMS3-201ENST00000437679 FOXP1Q9H334 677 aaPredicted RBP17.08■□□□□ 0.32
LIMS3-201ENST00000437679 SEPT9Q9UHD8 586 aaPredicted RBP17.08■□□□□ 0.32
LIMS3-201ENST00000437679 GTF3C3Q9Y5Q9 886 aa17.08■□□□□ 0.32
LIMS3-201ENST00000437679 CDH23Q9H251 3354 aa17.08■□□□□ 0.32
LIMS3-201ENST00000437679 LOXHD1Q8IVV2 1947 aa17.08■□□□□ 0.32
LIMS3-201ENST00000437679 KDM3AQ9Y4C1 1321 aa17.07■□□□□ 0.32
LIMS3-201ENST00000437679 RBAK-RBAKDNI3L0D1 243 aa17.07■□□□□ 0.32
LIMS3-201ENST00000437679 EML1O00423 815 aa17.07■□□□□ 0.32
LIMS3-201ENST00000437679 NEMFO60524 1076 aa17.07■□□□□ 0.32
LIMS3-201ENST00000437679 ATP2B1P20020 1258 aa17.07■□□□□ 0.32
LIMS3-201ENST00000437679 TMOD1P28289 359 aa17.07■□□□□ 0.32
LIMS3-201ENST00000437679 QARSP47897 775 aaKnown RBP17.07■□□□□ 0.32
LIMS3-201ENST00000437679 MKRN4PQ13434 485 aaPredicted RBP17.07■□□□□ 0.32
LIMS3-201ENST00000437679 FAM117BQ6P1L5 589 aa17.07■□□□□ 0.32
LIMS3-201ENST00000437679 MAP7D2Q96T17 732 aa17.07■□□□□ 0.32
LIMS3-201ENST00000437679 GAS2L1Q99501 681 aaPredicted RBP17.07■□□□□ 0.32
LIMS3-201ENST00000437679 RAD9AQ99638 391 aa17.07■□□□□ 0.32
LIMS3-201ENST00000437679 BACH2Q9BYV9 841 aa17.07■□□□□ 0.32
LIMS3-201ENST00000437679 PRDM12Q9H4Q4 367 aa17.07■□□□□ 0.32
LIMS3-201ENST00000437679 GINS2Q9Y248 185 aa17.07■□□□□ 0.32
LIMS3-201ENST00000437679 DDX11L8A8MPP1 907 aa17.06■□□□□ 0.32
LIMS3-201ENST00000437679 CD2BP2O95400 341 aaKnown RBP17.06■□□□□ 0.32
LIMS3-201ENST00000437679 P4HBP07237 508 aaKnown RBP17.06■□□□□ 0.32
LIMS3-201ENST00000437679 CD52P31358 61 aa17.06■□□□□ 0.32
LIMS3-201ENST00000437679 TBC1D8BQ0IIM8 1120 aa17.06■□□□□ 0.32
LIMS3-201ENST00000437679 PAK2Q13177 524 aa17.06■□□□□ 0.32
LIMS3-201ENST00000437679 EPHA7Q15375 998 aa17.06■□□□□ 0.32
LIMS3-201ENST00000437679 NCAPH2Q6IBW4 605 aa17.06■□□□□ 0.32
LIMS3-201ENST00000437679 EFCAB12Q6NXP0 572 aa17.06■□□□□ 0.32
LIMS3-201ENST00000437679 NIFKQ9BYG3 293 aaKnown RBP17.06■□□□□ 0.32
LIMS3-201ENST00000437679 AGO3Q9H9G7 860 aaKnown RBP17.06■□□□□ 0.32
LIMS3-201ENST00000437679 PCDHA12Q9UN75 941 aa17.06■□□□□ 0.32
LIMS3-201ENST00000437679 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.05■□□□□ 0.32
LIMS3-201ENST00000437679 CLCN3P51790 818 aa17.05■□□□□ 0.32
LIMS3-201ENST00000437679 TARBP2Q15633 366 aaKnown RBP17.05■□□□□ 0.32
LIMS3-201ENST00000437679 MTERF2Q49AM1 385 aa17.05■□□□□ 0.32
LIMS3-201ENST00000437679 ODR4Q5SWX8 454 aa17.05■□□□□ 0.32
LIMS3-201ENST00000437679 ZNF710Q8N1W2 664 aa17.05■□□□□ 0.32
LIMS3-201ENST00000437679 LRRC71Q8N4P6 559 aa17.05■□□□□ 0.32
LIMS3-201ENST00000437679 FTHL17Q9BXU8 183 aa17.05■□□□□ 0.32
LIMS3-201ENST00000437679 SUGCTQ9HAC7 445 aa17.05■□□□□ 0.32
LIMS3-201ENST00000437679 PADI3Q9ULW8 664 aa17.05■□□□□ 0.32
LIMS3-201ENST00000437679 AKT3Q9Y243 479 aa17.05■□□□□ 0.32
LIMS3-201ENST00000437679 INSL6Q9Y581 213 aa17.05■□□□□ 0.32
LIMS3-201ENST00000437679 WNT7AO00755 349 aa17.04■□□□□ 0.32
LIMS3-201ENST00000437679 RPS6KA5O75582 802 aa17.04■□□□□ 0.32
LIMS3-201ENST00000437679 UPP2O95045 317 aa17.04■□□□□ 0.32
LIMS3-201ENST00000437679 STBD1O95210 358 aa17.04■□□□□ 0.32
LIMS3-201ENST00000437679 VTNP04004 478 aa17.04■□□□□ 0.32
LIMS3-201ENST00000437679 MCM7P33993 719 aa17.04■□□□□ 0.32
LIMS3-201ENST00000437679 TXKP42681 527 aa17.04■□□□□ 0.32
LIMS3-201ENST00000437679 CRYBB1P53674 252 aaPredicted RBP17.04■□□□□ 0.32
LIMS3-201ENST00000437679 TAP1Q03518 808 aa17.04■□□□□ 0.32
LIMS3-201ENST00000437679 KIZQ2M2Z5 673 aa17.04■□□□□ 0.32
LIMS3-201ENST00000437679 NOSTRINQ8IVI9 506 aa17.04■□□□□ 0.32
LIMS3-201ENST00000437679 TOP1MTQ969P6 601 aa17.04■□□□□ 0.32
LIMS3-201ENST00000437679 PPP1R16BQ96T49 567 aa17.04■□□□□ 0.32
LIMS3-201ENST00000437679 TTC12Q9H892 705 aaPredicted RBP17.04■□□□□ 0.32
LIMS3-201ENST00000437679 NOL7Q9UMY1 257 aaKnown RBP17.04■□□□□ 0.32
LIMS3-201ENST00000437679 COL6A3P12111 3177 aa17.03■□□□□ 0.32
LIMS3-201ENST00000437679 LCHNA4D1U4 455 aa17.03■□□□□ 0.32
LIMS3-201ENST00000437679 TMEM150BA6NC51 233 aa17.03■□□□□ 0.32
LIMS3-201ENST00000437679 ENPP3O14638 875 aa17.03■□□□□ 0.32
LIMS3-201ENST00000437679 TRAPPC10P48553 1259 aa17.03■□□□□ 0.32
LIMS3-201ENST00000437679 DNM2P50570 870 aa17.03■□□□□ 0.32
LIMS3-201ENST00000437679 SPIRE1Q08AE8 756 aa17.03■□□□□ 0.32
LIMS3-201ENST00000437679 NFX1Q12986 1120 aaKnown RBP17.03■□□□□ 0.32
LIMS3-201ENST00000437679 ORC2Q13416 577 aaPredicted RBP17.03■□□□□ 0.32
LIMS3-201ENST00000437679 FAM43BQ6ZT52 329 aaPredicted RBP17.03■□□□□ 0.32
LIMS3-201ENST00000437679 LINC01465Q8N7H1 131 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms