RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 SWSAP1Q6NVH7 229 aa23.31■■□□□ 1.32
PTPRF-207ENST00000436724 FOXR2Q6PJQ5 311 aa23.31■■□□□ 1.32
PTPRF-207ENST00000436724 C2orf69Q8N8R5 385 aa23.31■■□□□ 1.32
PTPRF-207ENST00000436724 FGD4Q96M96 766 aa23.31■■□□□ 1.32
PTPRF-207ENST00000436724 EFCC1Q9HA90 598 aa23.31■■□□□ 1.32
PTPRF-207ENST00000436724 TRMT1Q9NXH9 659 aaKnown RBP23.31■■□□□ 1.32
PTPRF-207ENST00000436724 FGFR1OPO95684 399 aaKnown RBP23.31■■□□□ 1.32
PTPRF-207ENST00000436724 CETPP11597 493 aa23.31■■□□□ 1.32
PTPRF-207ENST00000436724 ANO5Q75V66 913 aa23.31■■□□□ 1.32
PTPRF-207ENST00000436724 CCDC60Q8IWA6 550 aaPredicted RBP23.31■■□□□ 1.32
PTPRF-207ENST00000436724 TNNT1P13805 278 aa23.3■■□□□ 1.32
PTPRF-207ENST00000436724 KLK7P49862 253 aa23.3■■□□□ 1.32
PTPRF-207ENST00000436724 DNM2P50570 870 aa23.3■■□□□ 1.32
PTPRF-207ENST00000436724 GTF2A2P52657 109 aa23.3■■□□□ 1.32
PTPRF-207ENST00000436724 FKBP1BP68106 108 aa23.3■■□□□ 1.32
PTPRF-207ENST00000436724 TBC1D8BQ0IIM8 1120 aa23.3■■□□□ 1.32
PTPRF-207ENST00000436724 KCTD2Q14681 263 aa23.3■■□□□ 1.32
PTPRF-207ENST00000436724 CST9Q5W186 159 aa23.3■■□□□ 1.32
PTPRF-207ENST00000436724 E4F1Q66K89 784 aaPredicted RBP23.3■■□□□ 1.32
PTPRF-207ENST00000436724 SMAP1Q8IYB5 467 aaPredicted RBP23.3■■□□□ 1.32
PTPRF-207ENST00000436724 RDM1Q8NG50 284 aa23.3■■□□□ 1.32
PTPRF-207ENST00000436724 CCDC43Q96MW1 224 aaKnown RBP23.3■■□□□ 1.32
PTPRF-207ENST00000436724 MMP19Q99542 508 aa23.3■■□□□ 1.32
PTPRF-207ENST00000436724 PNMA3Q9UL41 463 aa23.3■■□□□ 1.32
PTPRF-207ENST00000436724 ICAM3P32942 547 aa23.3■■□□□ 1.32
PTPRF-207ENST00000436724 ADAM9Q13443 819 aa23.3■■□□□ 1.32
PTPRF-207ENST00000436724 XKR9Q5GH70 373 aa23.3■■□□□ 1.32
PTPRF-207ENST00000436724 FAM178BQ8IXR5 827 aa23.3■■□□□ 1.32
PTPRF-207ENST00000436724 ANKRD13CQ8N6S4 541 aa23.3■■□□□ 1.32
PTPRF-207ENST00000436724 BAG1Q99933 345 aaPredicted RBP23.3■■□□□ 1.32
PTPRF-207ENST00000436724 PCNTO95613 3336 aa23.29■■□□□ 1.32
PTPRF-207ENST00000436724 MFAP3LO75121 409 aa23.29■■□□□ 1.32
PTPRF-207ENST00000436724 BMT2Q1RMZ1 405 aa23.29■■□□□ 1.32
PTPRF-207ENST00000436724 CCDC112Q8NEF3 446 aa23.29■■□□□ 1.32
PTPRF-207ENST00000436724 GPRC5CQ9NQ84 441 aa23.29■■□□□ 1.32
PTPRF-207ENST00000436724 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.29■■□□□ 1.32
PTPRF-207ENST00000436724 CTIFO43310 598 aaKnown RBP23.28■■□□□ 1.32
PTPRF-207ENST00000436724 NRDCO43847 1150 aa23.28■■□□□ 1.32
PTPRF-207ENST00000436724 NR2F2P24468 414 aa23.28■■□□□ 1.32
PTPRF-207ENST00000436724 GLIPR1L2Q4G1C9 344 aa23.28■■□□□ 1.32
PTPRF-207ENST00000436724 VWA3BQ502W6 1294 aa23.28■■□□□ 1.32
PTPRF-207ENST00000436724 ABHD15Q6UXT9 468 aa23.28■■□□□ 1.32
PTPRF-207ENST00000436724 ZNF720Q7Z2F6 126 aa23.28■■□□□ 1.32
PTPRF-207ENST00000436724 NDST4Q9H3R1 872 aa23.28■■□□□ 1.32
PTPRF-207ENST00000436724 TRAF3IP3Q9Y228 551 aa23.28■■□□□ 1.32
PTPRF-207ENST00000436724 DNAJC25-GNG10A0A024R161 153 aa23.28■■□□□ 1.32
PTPRF-207ENST00000436724 A0A1W2PQC6 194 aa23.28■■□□□ 1.32
PTPRF-207ENST00000436724 PSAPP07602 524 aa23.28■■□□□ 1.32
PTPRF-207ENST00000436724 UBA1P22314 1058 aaKnown RBP23.28■■□□□ 1.32
PTPRF-207ENST00000436724 SYCP1Q15431 976 aa23.28■■□□□ 1.32
PTPRF-207ENST00000436724 EDRF1Q3B7T1 1238 aa23.28■■□□□ 1.32
PTPRF-207ENST00000436724 CCDC40Q4G0X9 1142 aa23.28■■□□□ 1.32
PTPRF-207ENST00000436724 MROH8Q9H579 483 aa23.28■■□□□ 1.32
PTPRF-207ENST00000436724 ZMYM2Q9UBW7 1377 aa23.28■■□□□ 1.32
PTPRF-207ENST00000436724 SOCS7O14512 581 aa23.27■■□□□ 1.32
PTPRF-207ENST00000436724 MAN2A1Q16706 1144 aa23.27■■□□□ 1.32
PTPRF-207ENST00000436724 SPRYD7Q5W111 196 aa23.27■■□□□ 1.32
PTPRF-207ENST00000436724 PPP4R3CPQ6ZMV5 832 aa23.27■■□□□ 1.32
PTPRF-207ENST00000436724 CCAR2Q8N163 923 aaKnown RBP23.27■■□□□ 1.32
PTPRF-207ENST00000436724 CEP63Q96MT8 703 aa23.27■■□□□ 1.32
PTPRF-207ENST00000436724 SEL1LQ9UBV2 794 aa23.27■■□□□ 1.32
PTPRF-207ENST00000436724 ZNFX1Q9P2E3 1918 aaKnown RBP23.27■■□□□ 1.32
PTPRF-207ENST00000436724 LRRC37A2A6NM11 1700 aa23.27■■□□□ 1.32
PTPRF-207ENST00000436724 PDXKO00764 312 aa23.27■■□□□ 1.32
PTPRF-207ENST00000436724 CLIC2O15247 247 aa23.27■■□□□ 1.32
PTPRF-207ENST00000436724 TGFB1I1O43294 461 aa23.27■■□□□ 1.32
PTPRF-207ENST00000436724 STBD1O95210 358 aa23.27■■□□□ 1.32
PTPRF-207ENST00000436724 COPB2P35606 906 aa23.27■■□□□ 1.32
PTPRF-207ENST00000436724 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.27■■□□□ 1.32
PTPRF-207ENST00000436724 ZC3H3Q8IXZ2 948 aaKnown RBP23.27■■□□□ 1.32
PTPRF-207ENST00000436724 ATP6V0A1Q93050 837 aa23.27■■□□□ 1.32
PTPRF-207ENST00000436724 MCM3APO60318 1980 aa23.26■■□□□ 1.31
PTPRF-207ENST00000436724 TTC26A0AVF1 554 aa23.26■■□□□ 1.31
PTPRF-207ENST00000436724 RASSF10A6NK89 507 aa23.26■■□□□ 1.31
PTPRF-207ENST00000436724 CCDC155Q8N6L0 562 aa23.26■■□□□ 1.31
PTPRF-207ENST00000436724 GPRC5AQ8NFJ5 357 aa23.26■■□□□ 1.31
PTPRF-207ENST00000436724 PANX2Q96RD6 677 aa23.26■■□□□ 1.31
PTPRF-207ENST00000436724 PTPN18Q99952 460 aa23.26■■□□□ 1.31
PTPRF-207ENST00000436724 ANKEF1Q9NU02 776 aa23.26■■□□□ 1.31
PTPRF-207ENST00000436724 TYW1Q9NV66 732 aaKnown RBP23.26■■□□□ 1.31
PTPRF-207ENST00000436724 SYNGAP1Q96PV0 1343 aa23.26■■□□□ 1.31
PTPRF-207ENST00000436724 EIF3DO15371 548 aaKnown RBP eCLIP23.25■■□□□ 1.31
PTPRF-207ENST00000436724 LY6KQ17RY6 165 aa23.25■■□□□ 1.31
PTPRF-207ENST00000436724 CNGA4Q8IV77 575 aa23.25■■□□□ 1.31
PTPRF-207ENST00000436724 CETN3O15182 167 aa23.25■■□□□ 1.31
PTPRF-207ENST00000436724 STX10O60499 249 aa23.25■■□□□ 1.31
PTPRF-207ENST00000436724 ITGBL1O95965 494 aaPredicted RBP23.25■■□□□ 1.31
PTPRF-207ENST00000436724 SUPT20HL2P0C7V6 817 aa23.25■■□□□ 1.31
PTPRF-207ENST00000436724 PRKCEQ02156 737 aa23.25■■□□□ 1.31
PTPRF-207ENST00000436724 MIS18BP1Q6P0N0 1132 aa23.25■■□□□ 1.31
PTPRF-207ENST00000436724 CEP170P1Q96L14 293 aa23.25■■□□□ 1.31
PTPRF-207ENST00000436724 CALUO43852 315 aaPredicted RBP23.24■■□□□ 1.31
PTPRF-207ENST00000436724 FARP2O94887 1054 aaPredicted RBP23.24■■□□□ 1.31
PTPRF-207ENST00000436724 ARIH2O95376 493 aa23.24■■□□□ 1.31
PTPRF-207ENST00000436724 TPM1P09493 284 aa23.24■■□□□ 1.31
PTPRF-207ENST00000436724 KRT9P35527 623 aa23.24■■□□□ 1.31
PTPRF-207ENST00000436724 SOX10P56693 466 aa23.24■■□□□ 1.31
PTPRF-207ENST00000436724 MTF1Q14872 753 aa23.24■■□□□ 1.31
PTPRF-207ENST00000436724 FKBP15Q5T1M5 1219 aa23.24■■□□□ 1.31
PTPRF-207ENST00000436724 PCMTD1Q96MG8 357 aaPredicted RBP23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms