RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 TXKP42681 527 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 QARSP47897 775 aaKnown RBP12.86□□□□□ -0.35
COL28A1-203ENST00000435823 SMAD3P84022 425 aaKnown RBP12.86□□□□□ -0.35
COL28A1-203ENST00000435823 EPHA7Q15375 998 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 ZNF174Q15697 407 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 XKR3Q5GH77 459 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 FAM26DQ5JW98 314 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 IER5Q5VY09 327 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 HSCBQ8IWL3 235 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 NME8Q8N427 588 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 BANK1Q8NDB2 785 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 SNX21Q969T3 373 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 VWCEQ96DN2 955 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 ZBTB10Q96DT7 871 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 INTS4Q96HW7 963 aaKnown RBP12.86□□□□□ -0.35
COL28A1-203ENST00000435823 LRCH3Q96II8 777 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 MTMR9Q96QG7 549 aa12.86□□□□□ -0.35
COL28A1-203ENST00000435823 TTC12Q9H892 705 aaPredicted RBP12.86□□□□□ -0.35
COL28A1-203ENST00000435823 CXXC1Q9P0U4 656 aaPredicted RBP12.86□□□□□ -0.35
COL28A1-203ENST00000435823 SEPT9Q9UHD8 586 aaPredicted RBP12.86□□□□□ -0.35
COL28A1-203ENST00000435823 EFCAB14O75071 495 aa12.85□□□□□ -0.35
COL28A1-203ENST00000435823 P4HBP07237 508 aaKnown RBP12.85□□□□□ -0.35
COL28A1-203ENST00000435823 OR52Z1P0C646 297 aa12.85□□□□□ -0.35
COL28A1-203ENST00000435823 TMOD1P28289 359 aa12.85□□□□□ -0.35
COL28A1-203ENST00000435823 KCNJ6P48051 423 aa12.85□□□□□ -0.35
COL28A1-203ENST00000435823 MRPS6P82932 125 aaKnown RBP12.85□□□□□ -0.35
COL28A1-203ENST00000435823 MBTPS1Q14703 1052 aa12.85□□□□□ -0.35
COL28A1-203ENST00000435823 GPNMBQ14956 572 aa12.85□□□□□ -0.35
COL28A1-203ENST00000435823 GPR153Q6NV75 609 aa12.85□□□□□ -0.35
COL28A1-203ENST00000435823 METTL13Q8N6R0 699 aa12.85□□□□□ -0.35
COL28A1-203ENST00000435823 SEPT8Q92599 483 aa12.85□□□□□ -0.35
COL28A1-203ENST00000435823 TMEM60Q9H2L4 133 aa12.85□□□□□ -0.35
COL28A1-203ENST00000435823 TRPV2Q9Y5S1 764 aa12.85□□□□□ -0.35
COL28A1-203ENST00000435823 CDY2AQ9Y6F7 541 aa12.85□□□□□ -0.35
COL28A1-203ENST00000435823 RANBP2P49792 3224 aaKnown RBP12.85□□□□□ -0.35
COL28A1-203ENST00000435823 ABHD14A-ACY1A0A1B0GW23 586 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 DDX11L8A8MPP1 907 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 ZBTB42B2RXF5 422 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 C22orf31O95567 290 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 CHRNA1P02708 482 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 SPIRE1Q08AE8 756 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 MGAT3Q09327 533 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 TBC1D8BQ0IIM8 1120 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 IKBKEQ14164 716 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 TMEM266Q2M3C6 531 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 MTERF2Q49AM1 385 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 RILPL1Q5EBL4 403 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 NEK9Q8TD19 979 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 APBB2Q92870 758 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 SLC9A7Q96T83 725 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 LXNQ9BS40 222 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 NIFKQ9BYG3 293 aaKnown RBP12.84□□□□□ -0.35
COL28A1-203ENST00000435823 ZSWIM4Q9H7M6 989 aa12.84□□□□□ -0.35
COL28A1-203ENST00000435823 TET1Q8NFU7 2136 aa12.83□□□□□ -0.35
COL28A1-203ENST00000435823 VPS37CA5D8V6 355 aaPredicted RBP12.83□□□□□ -0.36
COL28A1-203ENST00000435823 GHRP10912 638 aa12.83□□□□□ -0.36
COL28A1-203ENST00000435823 ATP2A2P16615 1042 aaKnown RBP12.83□□□□□ -0.36
COL28A1-203ENST00000435823 CYP4A11Q02928 519 aa12.83□□□□□ -0.36
COL28A1-203ENST00000435823 TMEM62Q0P6H9 643 aa12.83□□□□□ -0.36
COL28A1-203ENST00000435823 PLEKHG4Q58EX7 1191 aa12.83□□□□□ -0.36
COL28A1-203ENST00000435823 EFCAB12Q6NXP0 572 aa12.83□□□□□ -0.36
COL28A1-203ENST00000435823 OTUD6AQ7L8S5 288 aa12.83□□□□□ -0.36
COL28A1-203ENST00000435823 C4orf19Q8IY42 314 aa12.83□□□□□ -0.36
COL28A1-203ENST00000435823 KIAA0319LQ8IZA0 1049 aa12.83□□□□□ -0.36
COL28A1-203ENST00000435823 USP38Q8NB14 1042 aa12.83□□□□□ -0.36
COL28A1-203ENST00000435823 DBF4BQ8NFT6 615 aa12.83□□□□□ -0.36
COL28A1-203ENST00000435823 ERMNQ8TAM6 284 aa12.83□□□□□ -0.36
COL28A1-203ENST00000435823 PHOSPHO2Q8TCD6 241 aa12.83□□□□□ -0.36
COL28A1-203ENST00000435823 DYDC2Q96IM9 177 aa12.83□□□□□ -0.36
COL28A1-203ENST00000435823 MAP7D2Q96T17 732 aa12.83□□□□□ -0.36
COL28A1-203ENST00000435823 EIF2AK1Q9BQI3 630 aaKnown RBP12.83□□□□□ -0.36
COL28A1-203ENST00000435823 IFIH1Q9BYX4 1025 aaKnown RBP12.83□□□□□ -0.36
COL28A1-203ENST00000435823 CELF4Q9BZC1 486 aaKnown RBP12.83□□□□□ -0.36
COL28A1-203ENST00000435823 MSRAQ9UJ68 235 aa12.83□□□□□ -0.36
COL28A1-203ENST00000435823 LAD1O00515 517 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 HSP90AA1P07900 732 aaKnown RBP12.82□□□□□ -0.36
COL28A1-203ENST00000435823 TECP42680 631 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 TOB1P50616 345 aaPredicted RBP12.82□□□□□ -0.36
COL28A1-203ENST00000435823 WDR5P61964 334 aaKnown RBP12.82□□□□□ -0.36
COL28A1-203ENST00000435823 CTTNQ14247 550 aaKnown RBP12.82□□□□□ -0.36
COL28A1-203ENST00000435823 NBR1Q14596 966 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 TARBP2Q15633 366 aaKnown RBP12.82□□□□□ -0.36
COL28A1-203ENST00000435823 RAB30Q15771 203 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 FBXO47Q5MNV8 452 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 ZNF697Q5TEC3 545 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 FAM109BQ6ICB4 259 aaPredicted RBP12.82□□□□□ -0.36
COL28A1-203ENST00000435823 TSHZ1Q6ZSZ6 1077 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 TPH2Q8IWU9 490 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 EXOC8Q8IYI6 725 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 ZNF710Q8N1W2 664 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 MS4A3Q96HJ5 214 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 JPH2Q9BR39 696 aaPredicted RBP12.82□□□□□ -0.36
COL28A1-203ENST00000435823 RAB34Q9BZG1 259 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 SUGCTQ9HAC7 445 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 RGL1Q9NZL6 768 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 AKT3Q9Y243 479 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 GINS2Q9Y248 185 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 PPME1Q9Y570 386 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 PCDHB6Q9Y5E3 794 aa12.82□□□□□ -0.36
COL28A1-203ENST00000435823 SQORQ9Y6N5 450 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms