RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 LXNQ9BS40 222 aa20.93■□□□□ 0.94
SHH-203ENST00000435425 OSBPL7Q9BZF2 842 aa20.93■□□□□ 0.94
SHH-203ENST00000435425 MTIF3Q9H2K0 278 aaKnown RBP20.93■□□□□ 0.94
SHH-203ENST00000435425 WRAP73Q9P2S5 460 aaPredicted RBP20.93■□□□□ 0.94
SHH-203ENST00000435425 CDY2AQ9Y6F7 541 aa20.93■□□□□ 0.94
SHH-203ENST00000435425 DKC1O60832 514 aaKnown RBP eCLIP20.92■□□□□ 0.94
SHH-203ENST00000435425 STBD1O95210 358 aa20.92■□□□□ 0.94
SHH-203ENST00000435425 C22orf31O95567 290 aa20.92■□□□□ 0.94
SHH-203ENST00000435425 MRPS6P82932 125 aaKnown RBP20.92■□□□□ 0.94
SHH-203ENST00000435425 FAM26DQ5JW98 314 aa20.92■□□□□ 0.94
SHH-203ENST00000435425 PLA2G4FQ68DD2 849 aa20.92■□□□□ 0.94
SHH-203ENST00000435425 RPAINQ86UA6 219 aa20.92■□□□□ 0.94
SHH-203ENST00000435425 C4orf32Q8N8J7 132 aa20.92■□□□□ 0.94
SHH-203ENST00000435425 PPP1R16BQ96T49 567 aa20.92■□□□□ 0.94
SHH-203ENST00000435425 SUGCTQ9HAC7 445 aa20.92■□□□□ 0.94
SHH-203ENST00000435425 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.92■□□□□ 0.94
SHH-203ENST00000435425 M0QZ92 97 aa20.91■□□□□ 0.94
SHH-203ENST00000435425 CXCL10P02778 98 aa20.91■□□□□ 0.94
SHH-203ENST00000435425 TBC1D8BQ0IIM8 1120 aa20.91■□□□□ 0.94
SHH-203ENST00000435425 TMEM266Q2M3C6 531 aa20.91■□□□□ 0.94
SHH-203ENST00000435425 TCTN1Q2MV58 587 aa20.91■□□□□ 0.94
SHH-203ENST00000435425 IER5Q5VY09 327 aa20.91■□□□□ 0.94
SHH-203ENST00000435425 EFCAB12Q6NXP0 572 aa20.91■□□□□ 0.94
SHH-203ENST00000435425 CNKSR3Q6P9H4 555 aa20.91■□□□□ 0.94
SHH-203ENST00000435425 LRRC71Q8N4P6 559 aa20.91■□□□□ 0.94
SHH-203ENST00000435425 NIFKQ9BYG3 293 aaKnown RBP20.91■□□□□ 0.94
SHH-203ENST00000435425 ZSWIM4Q9H7M6 989 aa20.91■□□□□ 0.94
SHH-203ENST00000435425 GINS2Q9Y248 185 aa20.91■□□□□ 0.94
SHH-203ENST00000435425 GRXCR1A8MXD5 290 aa20.9■□□□□ 0.94
SHH-203ENST00000435425 MAGEB2O15479 319 aa20.9■□□□□ 0.94
SHH-203ENST00000435425 SLITRK3O94933 977 aa20.9■□□□□ 0.94
SHH-203ENST00000435425 GHRP10912 638 aa20.9■□□□□ 0.94
SHH-203ENST00000435425 CLCN3P51790 818 aa20.9■□□□□ 0.94
SHH-203ENST00000435425 NPEPPSP55786 919 aa20.9■□□□□ 0.94
SHH-203ENST00000435425 MGAT3Q09327 533 aa20.9■□□□□ 0.94
SHH-203ENST00000435425 FAM109BQ6ICB4 259 aaPredicted RBP20.9■□□□□ 0.94
SHH-203ENST00000435425 ANO5Q75V66 913 aa20.9■□□□□ 0.94
SHH-203ENST00000435425 KIAA0319LQ8IZA0 1049 aa20.9■□□□□ 0.94
SHH-203ENST00000435425 DBF4BQ8NFT6 615 aa20.9■□□□□ 0.94
SHH-203ENST00000435425 TRPV2Q9Y5S1 764 aa20.9■□□□□ 0.94
SHH-203ENST00000435425 SLC4A7Q9Y6M7 1214 aa20.9■□□□□ 0.94
SHH-203ENST00000435425 A0A087WWV3 80 aa20.89■□□□□ 0.93
SHH-203ENST00000435425 ZBTB39O15060 712 aa20.89■□□□□ 0.93
SHH-203ENST00000435425 VTNP04004 478 aa20.89■□□□□ 0.93
SHH-203ENST00000435425 RPLP2P05387 115 aaKnown RBP20.89■□□□□ 0.93
SHH-203ENST00000435425 TARBP2Q15633 366 aaKnown RBP20.89■□□□□ 0.93
SHH-203ENST00000435425 RASIP1Q5U651 963 aa20.89■□□□□ 0.93
SHH-203ENST00000435425 BRAPQ7Z569 592 aa20.89■□□□□ 0.93
SHH-203ENST00000435425 C4orf19Q8IY42 314 aa20.89■□□□□ 0.93
SHH-203ENST00000435425 NME8Q8N427 588 aa20.89■□□□□ 0.93
SHH-203ENST00000435425 ZNF579Q8NAF0 562 aaKnown RBP20.89■□□□□ 0.93
SHH-203ENST00000435425 CEP170P1Q96L14 293 aa20.89■□□□□ 0.93
SHH-203ENST00000435425 CELF4Q9BZC1 486 aaKnown RBP20.89■□□□□ 0.93
SHH-203ENST00000435425 AKT3Q9Y243 479 aa20.89■□□□□ 0.93
SHH-203ENST00000435425 GBF1Q92538 1859 aa20.89■□□□□ 0.93
SHH-203ENST00000435425 ARID2Q68CP9 1835 aa20.89■□□□□ 0.93
SHH-203ENST00000435425 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.88■□□□□ 0.93
SHH-203ENST00000435425 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.88■□□□□ 0.93
SHH-203ENST00000435425 STX6O43752 255 aa20.88■□□□□ 0.93
SHH-203ENST00000435425 TMOD1P28289 359 aa20.88■□□□□ 0.93
SHH-203ENST00000435425 YWHABP31946 246 aaKnown RBP20.88■□□□□ 0.93
SHH-203ENST00000435425 IKBKEQ14164 716 aa20.88■□□□□ 0.93
SHH-203ENST00000435425 PLEKHG4Q58EX7 1191 aa20.88■□□□□ 0.93
SHH-203ENST00000435425 XKR9Q5GH70 373 aa20.88■□□□□ 0.93
SHH-203ENST00000435425 OTUD6AQ7L8S5 288 aa20.88■□□□□ 0.93
SHH-203ENST00000435425 NEK9Q8TD19 979 aa20.88■□□□□ 0.93
SHH-203ENST00000435425 SEPT8Q92599 483 aa20.88■□□□□ 0.93
SHH-203ENST00000435425 ZNF668Q96K58 619 aaPredicted RBP20.88■□□□□ 0.93
SHH-203ENST00000435425 HSD17B14Q9BPX1 270 aa20.88■□□□□ 0.93
SHH-203ENST00000435425 CYP26B1Q9NR63 512 aa20.88■□□□□ 0.93
SHH-203ENST00000435425 BMP2KQ9NSY1 1161 aaPredicted RBP20.88■□□□□ 0.93
SHH-203ENST00000435425 MTMR6Q9Y217 621 aa20.88■□□□□ 0.93
SHH-203ENST00000435425 MED24O75448 989 aa20.87■□□□□ 0.93
SHH-203ENST00000435425 KCNJ6P48051 423 aa20.87■□□□□ 0.93
SHH-203ENST00000435425 FXR2P51116 673 aaKnown RBP eCLIP20.87■□□□□ 0.93
SHH-203ENST00000435425 RESTQ13127 1097 aa20.87■□□□□ 0.93
SHH-203ENST00000435425 LPIN1Q14693 890 aa20.87■□□□□ 0.93
SHH-203ENST00000435425 FBXO47Q5MNV8 452 aa20.87■□□□□ 0.93
SHH-203ENST00000435425 DTHD1Q6ZMT9 781 aa20.87■□□□□ 0.93
SHH-203ENST00000435425 ERMNQ8TAM6 284 aa20.87■□□□□ 0.93
SHH-203ENST00000435425 MAP7D2Q96T17 732 aa20.87■□□□□ 0.93
SHH-203ENST00000435425 IFIH1Q9BYX4 1025 aaKnown RBP20.87■□□□□ 0.93
SHH-203ENST00000435425 CDHR5Q9HBB8 845 aa20.87■□□□□ 0.93
SHH-203ENST00000435425 LRWD1Q9UFC0 647 aa20.87■□□□□ 0.93
SHH-203ENST00000435425 LAD1O00515 517 aa20.86■□□□□ 0.93
SHH-203ENST00000435425 BAIAP3O94812 1187 aa20.86■□□□□ 0.93
SHH-203ENST00000435425 IL17AQ16552 155 aa20.86■□□□□ 0.93
SHH-203ENST00000435425 KIZQ2M2Z5 673 aa20.86■□□□□ 0.93
SHH-203ENST00000435425 FOXD4L5Q5VV16 416 aaPredicted RBP20.86■□□□□ 0.93
SHH-203ENST00000435425 FAM173BQ6P4H8 233 aa20.86■□□□□ 0.93
SHH-203ENST00000435425 CATSPER3Q86XQ3 398 aa20.86■□□□□ 0.93
SHH-203ENST00000435425 PIGOQ8TEQ8 1089 aa20.86■□□□□ 0.93
SHH-203ENST00000435425 FOXD4L4Q8WXT5 416 aaPredicted RBP20.86■□□□□ 0.93
SHH-203ENST00000435425 CCDC43Q96MW1 224 aaKnown RBP20.86■□□□□ 0.93
SHH-203ENST00000435425 CEP89Q96ST8 783 aa20.86■□□□□ 0.93
SHH-203ENST00000435425 MICAL3Q7RTP6 2002 aa20.86■□□□□ 0.93
SHH-203ENST00000435425 PTPRSQ13332 1948 aa20.86■□□□□ 0.93
SHH-203ENST00000435425 ABHD14A-ACY1A0A1B0GW23 586 aa20.85■□□□□ 0.93
SHH-203ENST00000435425 MAFO75444 373 aaPredicted RBP20.85■□□□□ 0.93
SHH-203ENST00000435425 SPATA31C1P0DKV0 1188 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms