RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 PIGBQ92521 554 aa12.54□□□□□ -0.4
HMGCS1-202ENST00000433297 CENPTQ96BT3 561 aa12.54□□□□□ -0.4
HMGCS1-202ENST00000433297 ACSBG1Q96GR2 724 aa12.54□□□□□ -0.4
HMGCS1-202ENST00000433297 ADAM7Q9H2U9 754 aa12.54□□□□□ -0.4
HMGCS1-202ENST00000433297 PABPC3Q9H361 631 aaKnown RBP12.54□□□□□ -0.4
HMGCS1-202ENST00000433297 C6orf50Q9HD87 102 aa12.54□□□□□ -0.4
HMGCS1-202ENST00000433297 IL17RBQ9NRM6 502 aa12.54□□□□□ -0.4
HMGCS1-202ENST00000433297 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.54□□□□□ -0.4
HMGCS1-202ENST00000433297 RTCBQ9Y3I0 505 aaKnown RBP12.54□□□□□ -0.4
HMGCS1-202ENST00000433297 GOLGA6L10A0A0M3HER8 536 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 FLOT1O75955 427 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 TDP2O95551 362 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 PDE6CP51160 858 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 INHBEP58166 350 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 CAVIN4Q5BKX8 364 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 GJB7Q6PEY0 223 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 BMP2KQ9NSY1 1161 aaPredicted RBP12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 SLC5A4Q9NY91 659 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 AIPL1Q9NZN9 384 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 USP15Q9Y4E8 981 aaPredicted RBP12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 AFF2P51816 1311 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 SNX3O60493 162 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 SMIM24O75264 130 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 PPFIA2O75334 1257 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 COPS2P61201 443 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 C11orf91Q3C1V1 193 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 AADACL2Q6P093 401 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 SLC44A5Q8NCS7 719 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 UBA5Q9GZZ9 404 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 SUN1O94901 812 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 GNAQP50148 359 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 RBBP5Q15291 538 aaKnown RBP12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 CDCA2Q69YH5 1023 aaPredicted RBP12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 IRF2BP2Q7Z5L9 587 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 ZNF384Q8TF68 577 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 RAD54LQ92698 747 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 ERP44Q9BS26 406 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 ERVK-5Q9HDB9 667 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 TMOD4Q9NZQ9 345 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 PTPN22Q9Y2R2 807 aa12.53□□□□□ -0.4
HMGCS1-202ENST00000433297 RASGRF2O14827 1237 aa12.52□□□□□ -0.4
HMGCS1-202ENST00000433297 UCHL3P15374 230 aa12.52□□□□□ -0.4
HMGCS1-202ENST00000433297 CREB1P16220 341 aa12.52□□□□□ -0.4
HMGCS1-202ENST00000433297 MECOMQ03112 1051 aa12.52□□□□□ -0.4
HMGCS1-202ENST00000433297 RNASELQ05823 741 aaKnown RBP12.52□□□□□ -0.4
HMGCS1-202ENST00000433297 CCDC152Q4G0S7 254 aa12.52□□□□□ -0.4
HMGCS1-202ENST00000433297 USP17L2Q6R6M4 530 aa12.52□□□□□ -0.4
HMGCS1-202ENST00000433297 VPS36Q86VN1 386 aa12.52□□□□□ -0.4
HMGCS1-202ENST00000433297 ZNF444Q8N0Y2 327 aaPredicted RBP12.52□□□□□ -0.4
HMGCS1-202ENST00000433297 ATP8B4Q8TF62 1192 aa12.52□□□□□ -0.4
HMGCS1-202ENST00000433297 PARP4Q9UKK3 1724 aaKnown RBP12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 ABCB11O95342 1321 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 TMEM110-MUSTN1A8MSY1 372 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 H0Y3Z8 333 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 SLC37A4O43826 429 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 GFPT2O94808 682 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 IL2RBP14784 551 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 LONRF1Q17RB8 773 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 C6orf118Q5T5N4 469 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 NT5DC3Q86UY8 548 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 IFT74Q96LB3 600 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 PAIP2Q9BPZ3 127 aaKnown RBP12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 SEC63Q9UGP8 760 aaKnown RBP12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 PPP1R9AQ9ULJ8 1098 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 CES2O00748 559 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 HIP1RO75146 1068 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 PCP11498 1178 aaKnown RBP12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 PLCG2P16885 1265 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 NR2F2P24468 414 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 GNA11P29992 359 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 CTCFP49711 727 aaPredicted RBP12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 TRIM59Q8IWR1 403 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 C18orf8Q96DM3 657 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 LBHD1Q9BQE6 289 aaPredicted RBP12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 ETNK1Q9HBU6 452 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 ADAM22Q9P0K1 906 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 STK17AQ9UEE5 414 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 HDAC9Q9UKV0 1011 aa12.52□□□□□ -0.41
HMGCS1-202ENST00000433297 E9PMD0 336 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 CETN3O15182 167 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 PRDX5P30044 214 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 ABL2P42684 1182 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 TNNI2P48788 182 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 EVA1CP58658 441 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 EXOC3L4Q17RC7 722 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 KIAA1755Q5JYT7 1200 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 SYCE1Q8N0S2 351 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 REXO1Q8N1G1 1221 aaKnown RBP12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 PROM2Q8N271 834 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 NAF1Q96HR8 494 aaKnown RBP12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 DNAJC17Q9NVM6 304 aaKnown RBP12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 TFCP2L1Q9NZI6 479 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 ARPP21Q9UBL0 812 aaPredicted RBP12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 BAZ2AQ9UIF9 1905 aaKnown RBP12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 FGRP09769 529 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 GALCP54803 685 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 MXRA7P84157 204 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 ADCY2Q08462 1091 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 SLMAPQ14BN4 828 aa12.51□□□□□ -0.41
HMGCS1-202ENST00000433297 CNGA2Q16280 664 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms