RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 NRXN2Q9P2S2 1712 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 CETN3O15182 167 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 SLC16A4O15374 487 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 KRT86O43790 486 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 PALMO75781 387 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 HOXA7P31268 230 aaPredicted RBP9.18□□□□□ -0.94
CD44-208ENST00000428726 CYP2C19P33261 490 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 GCLMP48507 274 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 RPS6P62753 249 aaKnown RBP9.18□□□□□ -0.94
CD44-208ENST00000428726 PTK2Q05397 1052 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 SCARA3Q6AZY7 606 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 DDX42Q86XP3 938 aaKnown RBP eCLIP9.18□□□□□ -0.94
CD44-208ENST00000428726 GUF1Q8N442 669 aaKnown RBP9.18□□□□□ -0.94
CD44-208ENST00000428726 KCNH7Q9NS40 1196 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 TOPORSQ9NS56 1045 aaPredicted RBP9.18□□□□□ -0.94
CD44-208ENST00000428726 ARMCX3Q9UH62 379 aaPredicted RBP9.18□□□□□ -0.94
CD44-208ENST00000428726 ADAM21Q9UKJ8 722 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 LRRIQ3A6PVS8 624 aaPredicted RBP9.18□□□□□ -0.94
CD44-208ENST00000428726 CSDE1O75534 798 aaKnown RBP9.18□□□□□ -0.94
CD44-208ENST00000428726 PRELPP51888 382 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 PEX3P56589 373 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 TUBB2AQ13885 445 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 FAM102BQ5T8I3 360 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 CCDC181Q5TID7 509 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 ANGEL2Q5VTE6 544 aaKnown RBP9.18□□□□□ -0.94
CD44-208ENST00000428726 KCTD16Q68DU8 428 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 FAM178BQ8IXR5 827 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 U2AF1L4Q8WU68 220 aaKnown RBP9.18□□□□□ -0.94
CD44-208ENST00000428726 WRNIP1Q96S55 665 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 DNAJC7Q99615 494 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 CBWD1Q9BRT8 395 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 TUBB2BQ9BVA1 445 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 TTYH3Q9C0H2 523 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 LRRC27Q9C0I9 530 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 DEFB129Q9H1M3 183 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 HACL1Q9UJ83 578 aa9.18□□□□□ -0.94
CD44-208ENST00000428726 CNTNAP1P78357 1384 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 PVALEFA0A1B0GWK0 134 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 EXOC3O60645 756 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 NR3C1P04150 777 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 IBSPP21815 317 aaPredicted RBP9.17□□□□□ -0.94
CD44-208ENST00000428726 CAP2P40123 477 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 ZNF211Q13398 564 aaPredicted RBP9.17□□□□□ -0.94
CD44-208ENST00000428726 BAATQ14032 418 aaPredicted RBP9.17□□□□□ -0.94
CD44-208ENST00000428726 ZSCAN26Q16670 478 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 CBWD6Q4V339 395 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 CBWD3Q5JTY5 395 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 CBWD5Q5RIA9 395 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 LLGL2Q6P1M3 1020 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 OTOP1Q7RTM1 612 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 GLYCTKQ8IVS8 523 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 DHX37Q8IY37 1157 aaKnown RBP9.17□□□□□ -0.94
CD44-208ENST00000428726 FLAD1Q8NFF5 587 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 UHMK1Q8TAS1 419 aaKnown RBP9.17□□□□□ -0.94
CD44-208ENST00000428726 DCAF4Q8WV16 495 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 SPIRE2Q8WWL2 714 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 PI4K2AQ9BTU6 479 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 MRIQ9BWK5 157 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 FUT8Q9BYC5 575 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 RNF19AQ9NV58 838 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 TAS2R14Q9NYV8 317 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 GCNT4Q9P109 453 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 CNOT7Q9UIV1 285 aaKnown RBP9.17□□□□□ -0.94
CD44-208ENST00000428726 COL4A5P29400 1685 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 K7ENM7 598 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 HIP1RO75146 1068 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 DLATP10515 647 aaKnown RBP9.17□□□□□ -0.94
CD44-208ENST00000428726 CEP55Q53EZ4 464 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 SFMBT2Q5VUG0 894 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 RETREG2Q8NC44 543 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 RBM46Q8TBY0 533 aaKnown RBP9.17□□□□□ -0.94
CD44-208ENST00000428726 BAP1Q92560 729 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 BTBD6Q96KE9 485 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 NAP1L4Q99733 375 aaKnown RBP9.17□□□□□ -0.94
CD44-208ENST00000428726 PAGR1Q9BTK6 254 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 NUP58Q9BVL2 599 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 GLT8D2Q9H1C3 349 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 RPAP3Q9H6T3 665 aaPredicted RBP9.17□□□□□ -0.94
CD44-208ENST00000428726 OSGEPQ9NPF4 335 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 MYO1AQ9UBC5 1043 aa9.17□□□□□ -0.94
CD44-208ENST00000428726 ARHGEF35A5YM69 484 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 XRCC5P13010 732 aaKnown RBP9.16□□□□□ -0.94
CD44-208ENST00000428726 GCFC2P16383 781 aaKnown RBP9.16□□□□□ -0.94
CD44-208ENST00000428726 MARK3P27448 753 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 CIAPIN1Q6FI81 312 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 ARHGAP27Q6ZUM4 889 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 RSRC2Q7L4I2 434 aaKnown RBP9.16□□□□□ -0.94
CD44-208ENST00000428726 MIER3Q7Z3K6 550 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 TRPM4Q8TD43 1214 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 FAM212AQ96EL1 285 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 KCTD10Q9H3F6 313 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 VCPKMTQ9H867 229 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 ZNF408Q9H9D4 720 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 RSPH14Q9UHP6 348 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 VAV3Q9UKW4 847 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 ZNRF3Q9ULT6 936 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 HTTP42858 3142 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 GREB1LQ9C091 1923 aaPredicted RBP9.16□□□□□ -0.94
CD44-208ENST00000428726 IGLV3-22A0A075B6J6 115 aa9.16□□□□□ -0.94
CD44-208ENST00000428726 FKBP1AP62942 108 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms