RNA–Protein interactions for RNA: ENST00000425836.6

VEGFA-209, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,575 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-209ENST00000425836 CEP89Q96ST8 783 aa27.39■■□□□ 1.97
VEGFA-209ENST00000425836 PCDHA2Q9Y5H9 948 aa27.39■■□□□ 1.97
VEGFA-209ENST00000425836 C22orf31O95567 290 aa27.38■■□□□ 1.97
VEGFA-209ENST00000425836 MUTP22033 750 aa27.38■■□□□ 1.97
VEGFA-209ENST00000425836 POTEGQ6S5H5 508 aa27.38■■□□□ 1.97
VEGFA-209ENST00000425836 OTUD6AQ7L8S5 288 aa27.38■■□□□ 1.97
VEGFA-209ENST00000425836 KRI1Q8N9T8 703 aaKnown RBP27.38■■□□□ 1.97
VEGFA-209ENST00000425836 PPP1R12CQ9BZL4 782 aa27.38■■□□□ 1.97
VEGFA-209ENST00000425836 CSRNP2Q9H175 543 aa27.38■■□□□ 1.97
VEGFA-209ENST00000425836 UMODL1Q5DID0 1318 aa27.37■■□□□ 1.97
VEGFA-209ENST00000425836 PPP6R2O75170 966 aa27.37■■□□□ 1.97
VEGFA-209ENST00000425836 TIMP1P01033 207 aa27.37■■□□□ 1.97
VEGFA-209ENST00000425836 NPEPPSP55786 919 aa27.37■■□□□ 1.97
VEGFA-209ENST00000425836 TAF2Q6P1X5 1199 aa27.37■■□□□ 1.97
VEGFA-209ENST00000425836 ZNF579Q8NAF0 562 aaKnown RBP27.37■■□□□ 1.97
VEGFA-209ENST00000425836 PIGOQ8TEQ8 1089 aa27.37■■□□□ 1.97
VEGFA-209ENST00000425836 CYP26B1Q9NR63 512 aa27.37■■□□□ 1.97
VEGFA-209ENST00000425836 RCOR1Q9UKL0 485 aa27.37■■□□□ 1.97
VEGFA-209ENST00000425836 H0YGN5 161 aa27.36■■□□□ 1.97
VEGFA-209ENST00000425836 XRCC6P12956 609 aaKnown RBP eCLIP27.36■■□□□ 1.971e-10■□□□□ 8.4
VEGFA-209ENST00000425836 RAG1P15918 1043 aa27.36■■□□□ 1.97
VEGFA-209ENST00000425836 CYP2C18P33260 490 aa27.36■■□□□ 1.97
VEGFA-209ENST00000425836 KRT85P78386 507 aa27.36■■□□□ 1.97
VEGFA-209ENST00000425836 BFSP2Q13515 415 aa27.36■■□□□ 1.97
VEGFA-209ENST00000425836 CAGE1Q8TC20 777 aa27.36■■□□□ 1.97
VEGFA-209ENST00000425836 CEP170P1Q96L14 293 aa27.36■■□□□ 1.97
VEGFA-209ENST00000425836 NACC1Q96RE7 527 aa27.36■■□□□ 1.97
VEGFA-209ENST00000425836 ANKEF1Q9NU02 776 aa27.36■■□□□ 1.97
VEGFA-209ENST00000425836 KIAA1024Q9UPX6 916 aa27.36■■□□□ 1.97
VEGFA-209ENST00000425836 RBL2Q08999 1139 aa27.35■■□□□ 1.97
VEGFA-209ENST00000425836 CCDC155Q8N6L0 562 aa27.35■■□□□ 1.97
VEGFA-209ENST00000425836 KCNG4Q8TDN1 519 aa27.35■■□□□ 1.97
VEGFA-209ENST00000425836 PITPNM1O00562 1244 aa27.35■■□□□ 1.97
VEGFA-209ENST00000425836 MAGEB2O15479 319 aa27.35■■□□□ 1.97
VEGFA-209ENST00000425836 CKBP12277 381 aa27.35■■□□□ 1.97
VEGFA-209ENST00000425836 NCLP19338 710 aaKnown RBP27.35■■□□□ 1.97
VEGFA-209ENST00000425836 UBA7P41226 1012 aa27.35■■□□□ 1.97
VEGFA-209ENST00000425836 TBC1D8BQ0IIM8 1120 aa27.35■■□□□ 1.97
VEGFA-209ENST00000425836 SPECC1Q5M775 1068 aa27.35■■□□□ 1.97
VEGFA-209ENST00000425836 CABP7Q86V35 215 aa27.35■■□□□ 1.97
VEGFA-209ENST00000425836 DDX19AQ9NUU7 478 aaKnown RBP27.35■■□□□ 1.97
VEGFA-209ENST00000425836 SMIM35A0A1B0GVV1 85 aa27.34■■□□□ 1.97
VEGFA-209ENST00000425836 THPOP40225 353 aa27.34■■□□□ 1.97
VEGFA-209ENST00000425836 ZRSR1Q15695 479 aaKnown RBP27.34■■□□□ 1.97
VEGFA-209ENST00000425836 XKR9Q5GH70 373 aa27.34■■□□□ 1.97
VEGFA-209ENST00000425836 HYIQ5T013 277 aa27.34■■□□□ 1.97
VEGFA-209ENST00000425836 USP49Q70CQ1 688 aa27.34■■□□□ 1.97
VEGFA-209ENST00000425836 RPAINQ86UA6 219 aa27.34■■□□□ 1.97
VEGFA-209ENST00000425836 RETREG2Q8NC44 543 aa27.34■■□□□ 1.97
VEGFA-209ENST00000425836 DNAJB3Q8WWF6 145 aa27.34■■□□□ 1.97
VEGFA-209ENST00000425836 EPSTI1Q96J88 318 aa27.34■■□□□ 1.97
VEGFA-209ENST00000425836 PNMA5Q96PV4 448 aa27.34■■□□□ 1.97
VEGFA-209ENST00000425836 WNT8AQ9H1J5 351 aa27.34■■□□□ 1.97
VEGFA-209ENST00000425836 CHMP5Q9NZZ3 219 aa27.34■■□□□ 1.97
VEGFA-209ENST00000425836 TNRC18O15417 2968 aaPredicted RBP27.34■■□□□ 1.97
VEGFA-209ENST00000425836 RARRES1P49788 294 aa27.33■■□□□ 1.97
VEGFA-209ENST00000425836 GRB10Q13322 594 aa27.33■■□□□ 1.97
VEGFA-209ENST00000425836 BADQ92934 168 aa27.33■■□□□ 1.97
VEGFA-209ENST00000425836 FAM49AQ9H0Q0 323 aaPredicted RBP27.33■■□□□ 1.97
VEGFA-209ENST00000425836 DBR1Q9UK59 544 aaKnown RBP27.33■■□□□ 1.97
VEGFA-209ENST00000425836 PPME1Q9Y570 386 aa27.33■■□□□ 1.97
VEGFA-209ENST00000425836 IGKV6-21A0A0C4DH24 114 aa27.32■■□□□ 1.96
VEGFA-209ENST00000425836 CCL23P55773 120 aa27.32■■□□□ 1.96
VEGFA-209ENST00000425836 ZNF618Q5T7W0 954 aa27.32■■□□□ 1.96
VEGFA-209ENST00000425836 MFSD5Q6N075 450 aa27.32■■□□□ 1.96
VEGFA-209ENST00000425836 EFCAB12Q6NXP0 572 aa27.32■■□□□ 1.96
VEGFA-209ENST00000425836 TRAF7Q6Q0C0 670 aa27.32■■□□□ 1.96
VEGFA-209ENST00000425836 KIAA0319LQ8IZA0 1049 aa27.32■■□□□ 1.96
VEGFA-209ENST00000425836 METTL13Q8N6R0 699 aa27.32■■□□□ 1.96
VEGFA-209ENST00000425836 LINC01465Q8N7H1 131 aa27.32■■□□□ 1.96
VEGFA-209ENST00000425836 CCSER1Q9C0I3 900 aa27.32■■□□□ 1.96
VEGFA-209ENST00000425836 KDM3AQ9Y4C1 1321 aa27.32■■□□□ 1.96
VEGFA-209ENST00000425836 SLC26A4O43511 780 aa27.31■■□□□ 1.96
VEGFA-209ENST00000425836 CAND2O75155 1236 aa27.31■■□□□ 1.96
VEGFA-209ENST00000425836 MAFO75444 373 aaPredicted RBP27.31■■□□□ 1.96
VEGFA-209ENST00000425836 SELPP16109 830 aa27.31■■□□□ 1.96
VEGFA-209ENST00000425836 AXDND1Q5T1B0 1012 aaPredicted RBP27.31■■□□□ 1.96
VEGFA-209ENST00000425836 RSPH3Q86UC2 560 aa27.31■■□□□ 1.96
VEGFA-209ENST00000425836 LRRC71Q8N4P6 559 aa27.31■■□□□ 1.96
VEGFA-209ENST00000425836 LEO1Q8WVC0 666 aaPredicted RBP27.31■■□□□ 1.96
VEGFA-209ENST00000425836 SYMPKQ92797 1274 aaKnown RBP27.31■■□□□ 1.96
VEGFA-209ENST00000425836 PLIN2Q99541 437 aa27.31■■□□□ 1.96
VEGFA-209ENST00000425836 PCDHA7Q9UN72 937 aa27.31■■□□□ 1.96
VEGFA-209ENST00000425836 MYH9P35579 1960 aaKnown RBP27.31■■□□□ 1.96
VEGFA-209ENST00000425836 CUTAO60888 179 aa27.31■■□□□ 1.96
VEGFA-209ENST00000425836 IQCF3P0C7M6 154 aa27.31■■□□□ 1.96
VEGFA-209ENST00000425836 CLCN3P51790 818 aa27.31■■□□□ 1.96
VEGFA-209ENST00000425836 KCNK18Q7Z418 384 aa27.31■■□□□ 1.96
VEGFA-209ENST00000425836 SCLYQ96I15 445 aa27.31■■□□□ 1.96
VEGFA-209ENST00000425836 SPATA32Q96LK8 384 aa27.31■■□□□ 1.96
VEGFA-209ENST00000425836 DHX33Q9H6R0 707 aaKnown RBP27.31■■□□□ 1.96
VEGFA-209ENST00000425836 SUGCTQ9HAC7 445 aa27.31■■□□□ 1.96
VEGFA-209ENST00000425836 DNM3Q9UQ16 869 aa27.31■■□□□ 1.96
VEGFA-209ENST00000425836 E9PMD0 336 aa27.3■■□□□ 1.96
VEGFA-209ENST00000425836 RFC5P40937 340 aa27.3■■□□□ 1.96
VEGFA-209ENST00000425836 ME1P48163 572 aa27.3■■□□□ 1.96
VEGFA-209ENST00000425836 MDM2Q00987 491 aaPredicted RBP27.3■■□□□ 1.96
VEGFA-209ENST00000425836 MKRN4PQ13434 485 aaPredicted RBP27.3■■□□□ 1.96
VEGFA-209ENST00000425836 TMEM119Q4V9L6 283 aa27.3■■□□□ 1.96
VEGFA-209ENST00000425836 LRRC8DQ7L1W4 858 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms