RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 SPDYE2BA6NHP3 402 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 SUPT3HO75486 399 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 SPDYE6P0CI01 402 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 SPATA17Q96L03 361 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 ZMAT2Q96NC0 199 aaKnown RBP12.92□□□□□ -0.34
UBR4-205ENST00000417040 LRRC37BQ96QE4 947 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 LZTS1Q9Y250 596 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 KDM5DQ9BY66 1539 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 KDM6BO15054 1643 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 H3BRJ5 948 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 SEC24DO94855 1032 aaPredicted RBP12.92□□□□□ -0.34
UBR4-205ENST00000417040 KRT14P02533 472 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 TRIM59Q8IWR1 403 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 SPATA31E1Q6ZUB1 1445 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 LGALS16A8MUM7 142 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 CTIFO43310 598 aaKnown RBP12.92□□□□□ -0.34
UBR4-205ENST00000417040 PRPSAP2O60256 369 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 CIAO1O76071 339 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 CDR2Q01850 454 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 NSUN2Q08J23 767 aaKnown RBP eCLIP12.92□□□□□ -0.34
UBR4-205ENST00000417040 MTERF2Q49AM1 385 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 ZNF473Q8WTR7 871 aaKnown RBP12.92□□□□□ -0.34
UBR4-205ENST00000417040 TBC1D22AQ8WUA7 517 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 CEP170P1Q96L14 293 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 ZNF804BA4D1E1 1349 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 MLH3Q9UHC1 1453 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 SHANK2Q9UPX8 1470 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 PSMA2P25787 234 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 Q3C1V9 767 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 OR2W6PQ8NHA6 318 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 RNF217Q8TC41 542 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 NUDCD1Q96RS6 583 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 ADPGKQ9BRR6 497 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 SPC25Q9HBM1 224 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 MRPL47Q9HD33 250 aaKnown RBP12.92□□□□□ -0.34
UBR4-205ENST00000417040 TSR3Q9UJK0 312 aaKnown RBP12.92□□□□□ -0.34
UBR4-205ENST00000417040 GOLGA8QA0A0J9YX86 632 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 GOLGA8OA6NCC3 632 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 GOLGA8NF8WBI6 632 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 TTLL1O95922 423 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 CNGA1P29973 690 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 PTPN12Q05209 780 aaKnown RBP12.92□□□□□ -0.34
UBR4-205ENST00000417040 SLC26A7Q8TE54 656 aa12.92□□□□□ -0.34
UBR4-205ENST00000417040 RNF25Q96BH1 459 aaPredicted RBP12.92□□□□□ -0.34
UBR4-205ENST00000417040 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.92□□□□□ -0.34
UBR4-205ENST00000417040 HAUS5O94927 633 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 PSMC1P62191 440 aaKnown RBP12.91□□□□□ -0.34
UBR4-205ENST00000417040 GLE1Q53GS7 698 aaKnown RBP12.91□□□□□ -0.34
UBR4-205ENST00000417040 FBXL13Q8NEE6 735 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 C1orf54Q8WWF1 131 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 POLR3CQ9BUI4 534 aaPredicted RBP12.91□□□□□ -0.34
UBR4-205ENST00000417040 OSBPL5Q9H0X9 879 aaPredicted RBP12.91□□□□□ -0.34
UBR4-205ENST00000417040 TTC26A0AVF1 554 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 SRGAP2BP0DMP2 458 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 MDM2Q00987 491 aaPredicted RBP12.91□□□□□ -0.34
UBR4-205ENST00000417040 MUM1L1Q5H9M0 696 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 PDLIM2Q96JY6 352 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 AMNQ9BXJ7 453 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 CCDC90BQ9GZT6 254 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 PARVGQ9HBI0 331 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 TMEM260Q9NX78 707 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 CEP72Q9P209 647 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 NOC2LQ9Y3T9 749 aaKnown RBP12.91□□□□□ -0.34
UBR4-205ENST00000417040 PHF20L1A8MW92 1017 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 ZBED1O96006 694 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 IFNAR1P17181 557 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 CYP2C19P33261 490 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 MXI1P50539 228 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 ANGPTL8Q6UXH0 198 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 APOBEC2Q9Y235 224 aaKnown RBP12.91□□□□□ -0.34
UBR4-205ENST00000417040 TCP11X1B4DZS4 312 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 INO80B-WBP1J3KQ70 363 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 CYP2D6P10635 497 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 BRAFP15056 766 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 CDC27P30260 824 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 KCNQ4P56696 695 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 MCF2L2Q86YR7 1114 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 INO80BQ9C086 356 aaPredicted RBP12.91□□□□□ -0.34
UBR4-205ENST00000417040 UBN1Q9NPG3 1134 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 GTSE1Q9NYZ3 720 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 MAP3K15Q6ZN16 1313 aa12.91□□□□□ -0.34
UBR4-205ENST00000417040 DIAPH2O60879 1101 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 DAB2P98082 770 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 NCAPHQ15003 741 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 SEPT2Q15019 361 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 ASPRV1Q53RT3 343 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 KRT26Q7Z3Y9 468 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 WDR64B1ANS9 1081 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 UBAP1LF5GYI3 381 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 GOLGA8RI6L899 631 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 LPXNO60711 386 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 ATXN3P54252 364 aaPredicted RBP12.9□□□□□ -0.34
UBR4-205ENST00000417040 ERFEQ4G0M1 354 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 EEPD1Q7L9B9 569 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 KRT27Q7Z3Y8 459 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 BPIFA3Q9BQP9 254 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 STAT2P52630 851 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 NCLNQ969V3 563 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 NUP85Q9BW27 656 aa12.9□□□□□ -0.34
UBR4-205ENST00000417040 VPS11Q9H270 941 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms