RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 LARP4BQ92615 738 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 GOLPH3LQ9H4A5 285 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 RAD21L1Q9H4I0 556 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 GINM1Q9NU53 330 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 LCMT1Q9UIC8 334 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 PI4K2BG5E9Z4 385 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 ARMCX4Q5H9R4 360 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 GOLGA8JA6NMD2 632 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 CYTH3O43739 400 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 CXCR5P32302 372 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 RBM6P78332 1123 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 CSTF3Q12996 717 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 AATFQ9NY61 560 aaKnown RBP eCLIP14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 HIC1Q14526 733 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 EXOC8Q8IYI6 725 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 RSPH1Q8WYR4 309 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 IFT43Q96FT9 208 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 SPRTNQ9H040 489 aaPredicted RBP14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 RNPEPQ9H4A4 650 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 OLFML3Q9NRN5 406 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 CCDC22O60826 627 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 ABCE1P61221 599 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 CLEC4FQ8N1N0 589 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 STAG2Q8N3U4 1231 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 DIS3LQ8TF46 1054 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 ZBED2Q9BTP6 218 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 CYP4F11Q9HBI6 524 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 KRCC1Q9NPI7 259 aaPredicted RBP14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 RPRD1BQ9NQG5 326 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 TIAM1Q13009 1591 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 HSPA9P38646 679 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 SPATA1Q5VX52 437 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 KIAA1841Q6NSI8 718 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 SLC35F6Q8N357 371 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 FAM149B1Q96BN6 582 aa14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 ZC3H7BQ9UGR2 993 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-204ENST00000413716 AOX1Q06278 1338 aa14.21□□□□□ -0.14
CCDC88A-204ENST00000413716 NPM3O75607 178 aaKnown RBP14.21□□□□□ -0.14
CCDC88A-204ENST00000413716 RNF103O00237 685 aa14.21□□□□□ -0.14
CCDC88A-204ENST00000413716 KLHL38Q2WGJ6 581 aa14.21□□□□□ -0.14
CCDC88A-204ENST00000413716 COPS6Q7L5N1 327 aa14.21□□□□□ -0.14
CCDC88A-204ENST00000413716 KIFC1Q9BW19 673 aa14.21□□□□□ -0.14
CCDC88A-204ENST00000413716 PIGUQ9H490 435 aa14.21□□□□□ -0.14
CCDC88A-204ENST00000413716 RHBDL2Q9NX52 303 aa14.21□□□□□ -0.14
CCDC88A-204ENST00000413716 MYH11P35749 1972 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 IQCA1LA6NCM1 817 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 IRS4O14654 1257 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 SYNCRIPO60506 623 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 TRIP13Q15645 432 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 SUGCTQ9HAC7 445 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 RECQLP46063 649 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 SHROOM1Q2M3G4 852 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 DAB2IPQ5VWQ8 1189 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 PPP1R14AQ96A00 147 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 CALR3Q96L12 384 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 VPS54Q9P1Q0 977 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 HAUS5O94927 633 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 KLC1Q07866 573 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 LRRN2O75325 713 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 SERPINB4P48594 390 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 NFRKBQ6P4R8 1299 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 AP1S2P56377 157 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 SLFN12LQ6IEE8 588 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 COG1Q8WTW3 980 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 VPS50Q96JG6 964 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 TRIM54Q9BYV2 358 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 PSTPIP2Q9H939 334 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 WDR7Q9Y4E6 1490 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 ATXN3P54252 364 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 C8orf34Q49A92 452 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 APPL2Q8NEU8 664 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 UVRAGQ9P2Y5 699 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 RTCBQ9Y3I0 505 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 NUMA1Q14980 2115 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 PFKFB1P16118 471 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 SH3KBP1Q96B97 665 aa14.2□□□□□ -0.14
CCDC88A-204ENST00000413716 ZNF18P17022 549 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 KCNA3P22001 575 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 BBS9Q3SYG4 887 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 DZIP3Q86Y13 1208 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 LRRC4Q9HBW1 653 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 MORC2Q9Y6X9 1032 aaPredicted RBP14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 GPAA1O43292 621 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 GTPBP6O43824 516 aaPredicted RBP14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 FAM107AO95990 144 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 DMPKQ09013 629 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 CASP8Q14790 479 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 PKN3Q6P5Z2 889 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 TBC1D19Q8N5T2 526 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 HSPH1Q92598 858 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 INPP5DQ92835 1189 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 ARMT1Q9H993 441 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 MYO1GB0I1T2 1018 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 MYO1CO00159 1063 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 SERPINB3P29508 390 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 MAPRE1Q15691 268 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 GALNT17Q6IS24 598 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 SARM1Q6SZW1 724 aa14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 ZNF467Q7Z7K2 595 aaPredicted RBP14.19□□□□□ -0.14
CCDC88A-204ENST00000413716 EGFL8Q99944 293 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms