RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NT5DC3Q86UY8 548 aa22.86■■□□□ 1.25
CTCF-202ENST00000401394 RDH13Q8NBN7 331 aa22.86■■□□□ 1.25
CTCF-202ENST00000401394 ELMO3Q96BJ8 720 aa22.86■■□□□ 1.25
CTCF-202ENST00000401394 FAM212AQ96EL1 285 aa22.86■■□□□ 1.25
CTCF-202ENST00000401394 RGL1Q9NZL6 768 aa22.86■■□□□ 1.25
CTCF-202ENST00000401394 CCDC88AQ3V6T2 1871 aa22.86■■□□□ 1.25
CTCF-202ENST00000401394 RIMBP2O15034 1052 aa22.86■■□□□ 1.25
CTCF-202ENST00000401394 CACNB3P54284 484 aa22.86■■□□□ 1.25
CTCF-202ENST00000401394 GSCP56915 257 aaPredicted RBP22.86■■□□□ 1.25
CTCF-202ENST00000401394 PIGOQ8TEQ8 1089 aa22.86■■□□□ 1.25
CTCF-202ENST00000401394 LUC7LQ9NQ29 371 aaKnown RBP22.86■■□□□ 1.25
CTCF-202ENST00000401394 SPATA31A1Q5TZJ5 1347 aa22.86■■□□□ 1.25
CTCF-202ENST00000401394 DDX60LQ5H9U9 1706 aaKnown RBP22.86■■□□□ 1.25
CTCF-202ENST00000401394 RREB1Q92766 1687 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 SPDYE3A6NKU9 549 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 F8VZ95 297 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 IFNAR2P48551 515 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 MARCKSL1P49006 195 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 SCNN1DP51172 638 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 SLC12A3P55017 1021 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 PLTPP55058 493 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 IFFO1Q0D2I5 559 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 FAM98CQ17RN3 349 aaKnown RBP22.85■■□□□ 1.25
CTCF-202ENST00000401394 ANKRD20A8PQ5CZ79 823 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 EP400NLQ6ZTU2 488 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 CPLX4Q7Z7G2 160 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 ATP8B4Q8TF62 1192 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 TBC1D31Q96DN5 1066 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 SELENOSQ9BQE4 189 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 GIT2Q14161 759 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 CEP63Q96MT8 703 aa22.85■■□□□ 1.25
CTCF-202ENST00000401394 DHX36Q9H2U1 1008 aaKnown RBP22.85■■□□□ 1.25
CTCF-202ENST00000401394 TMEM110-MUSTN1A8MSY1 372 aa22.84■■□□□ 1.25
CTCF-202ENST00000401394 PPP4R3AQ6IN85 833 aa22.84■■□□□ 1.25
CTCF-202ENST00000401394 CYB5D1Q6P9G0 228 aa22.84■■□□□ 1.25
CTCF-202ENST00000401394 FUKQ8N0W3 1084 aa22.84■■□□□ 1.25
CTCF-202ENST00000401394 ACTRT1Q8TDG2 376 aa22.84■■□□□ 1.25
CTCF-202ENST00000401394 ARHGEF1Q92888 912 aaKnown RBP22.84■■□□□ 1.25
CTCF-202ENST00000401394 RUSC1Q9BVN2 902 aa22.84■■□□□ 1.25
CTCF-202ENST00000401394 PCDHAC2Q9Y5I4 1007 aa22.84■■□□□ 1.25
CTCF-202ENST00000401394 COL16A1Q07092 1604 aaPredicted RBP22.84■■□□□ 1.25
CTCF-202ENST00000401394 GPR75-ASB3A0A0A6YYF3 556 aa22.84■■□□□ 1.25
CTCF-202ENST00000401394 ESYT2A0FGR8 921 aa22.84■■□□□ 1.25
CTCF-202ENST00000401394 AFPP02771 609 aaKnown RBP22.84■■□□□ 1.25
CTCF-202ENST00000401394 USH1GQ495M9 461 aa22.84■■□□□ 1.25
CTCF-202ENST00000401394 MICALCLQ6ZW33 695 aa22.84■■□□□ 1.25
CTCF-202ENST00000401394 SLC35G2Q8TBE7 412 aa22.84■■□□□ 1.25
CTCF-202ENST00000401394 MLXIPLQ9NP71 852 aa22.84■■□□□ 1.25
CTCF-202ENST00000401394 TPX2Q9ULW0 747 aaKnown RBP22.84■■□□□ 1.25
CTCF-202ENST00000401394 MYH7BA7E2Y1 1941 aa22.84■■□□□ 1.25
CTCF-202ENST00000401394 TRIM49P0CI25 452 aa22.83■■□□□ 1.25
CTCF-202ENST00000401394 TRIM49CP0CI26 452 aa22.83■■□□□ 1.25
CTCF-202ENST00000401394 XRCC5P13010 732 aaKnown RBP22.83■■□□□ 1.25
CTCF-202ENST00000401394 SCTRP47872 440 aa22.83■■□□□ 1.25
CTCF-202ENST00000401394 PLS1Q14651 629 aa22.83■■□□□ 1.25
CTCF-202ENST00000401394 EMC10Q5UCC4 262 aa22.83■■□□□ 1.25
CTCF-202ENST00000401394 ZFPM1Q8IX07 1006 aa22.83■■□□□ 1.25
CTCF-202ENST00000401394 OLIG1Q8TAK6 271 aa22.83■■□□□ 1.25
CTCF-202ENST00000401394 EPB41L4BQ9H329 900 aa22.83■■□□□ 1.25
CTCF-202ENST00000401394 ACP6Q9NPH0 428 aa22.83■■□□□ 1.25
CTCF-202ENST00000401394 CTNND1O60716 968 aaKnown RBP22.83■■□□□ 1.25
CTCF-202ENST00000401394 RPSAP08865 295 aaKnown RBP22.83■■□□□ 1.25
CTCF-202ENST00000401394 NMT1P30419 496 aaKnown RBP22.83■■□□□ 1.25
CTCF-202ENST00000401394 CLK2P49760 499 aaKnown RBP22.83■■□□□ 1.25
CTCF-202ENST00000401394 EPHA7Q15375 998 aa22.83■■□□□ 1.25
CTCF-202ENST00000401394 ARHGAP44Q17R89 818 aa22.83■■□□□ 1.25
CTCF-202ENST00000401394 ALG3Q92685 438 aa22.83■■□□□ 1.25
CTCF-202ENST00000401394 BHMT2Q9H2M3 363 aa22.83■■□□□ 1.25
CTCF-202ENST00000401394 PNMA6FA0A0J9YX94 578 aa22.83■■□□□ 1.24
CTCF-202ENST00000401394 EVI5O60447 810 aa22.83■■□□□ 1.24
CTCF-202ENST00000401394 GCNT3O95395 438 aa22.83■■□□□ 1.24
CTCF-202ENST00000401394 H2AFZP0C0S5 128 aa22.83■■□□□ 1.24
CTCF-202ENST00000401394 SMTNP53814 917 aa22.83■■□□□ 1.24
CTCF-202ENST00000401394 ZNF543Q08ER8 600 aa22.83■■□□□ 1.24
CTCF-202ENST00000401394 H2AFVQ71UI9 128 aa22.83■■□□□ 1.24
CTCF-202ENST00000401394 CUL5Q93034 780 aa22.83■■□□□ 1.24
CTCF-202ENST00000401394 SLC35C1Q96A29 364 aa22.83■■□□□ 1.24
CTCF-202ENST00000401394 C18orf8Q96DM3 657 aa22.83■■□□□ 1.24
CTCF-202ENST00000401394 NUCKS1Q9H1E3 243 aaKnown RBP22.83■■□□□ 1.24
CTCF-202ENST00000401394 STXBP5LQ9Y2K9 1186 aa22.83■■□□□ 1.24
CTCF-202ENST00000401394 SCP2P22307 547 aa22.82■■□□□ 1.24
CTCF-202ENST00000401394 HOXA13P31271 388 aaPredicted RBP22.82■■□□□ 1.24
CTCF-202ENST00000401394 GTF2IP78347 998 aa22.82■■□□□ 1.24
CTCF-202ENST00000401394 GSTO1P78417 241 aa22.82■■□□□ 1.24
CTCF-202ENST00000401394 COG5Q9UP83 839 aa22.82■■□□□ 1.24
CTCF-202ENST00000401394 ZDHHC14Q8IZN3 488 aa22.82■■□□□ 1.24
CTCF-202ENST00000401394 FBXO25Q8TCJ0 367 aa22.82■■□□□ 1.24
CTCF-202ENST00000401394 RNF25Q96BH1 459 aaPredicted RBP22.82■■□□□ 1.24
CTCF-202ENST00000401394 CCDC113Q9H0I3 377 aa22.82■■□□□ 1.24
CTCF-202ENST00000401394 NARFQ9UHQ1 456 aa22.82■■□□□ 1.24
CTCF-202ENST00000401394 UBAP1LF5GYI3 381 aa22.81■■□□□ 1.24
CTCF-202ENST00000401394 PPP1R12BO60237 982 aaPredicted RBP22.81■■□□□ 1.24
CTCF-202ENST00000401394 SPATA31C1P0DKV0 1188 aa22.81■■□□□ 1.24
CTCF-202ENST00000401394 CHN1P15882 459 aa22.81■■□□□ 1.24
CTCF-202ENST00000401394 CUL1Q13616 776 aa22.81■■□□□ 1.24
CTCF-202ENST00000401394 KNOP1Q1ED39 458 aaKnown RBP22.81■■□□□ 1.24
CTCF-202ENST00000401394 TBC1D10BQ4KMP7 808 aaPredicted RBP22.81■■□□□ 1.24
CTCF-202ENST00000401394 ZNF746Q6NUN9 644 aaPredicted RBP22.81■■□□□ 1.24
CTCF-202ENST00000401394 TRMT1LQ7Z2T5 733 aaKnown RBP22.81■■□□□ 1.24
CTCF-202ENST00000401394 LRRC45Q96CN5 670 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms