RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 LXNQ9BS40 222 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 CCDC113Q9H0I3 377 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 ODF2LQ9ULJ1 636 aa7.86□□□□□ -1.15
LIMA1-202ENST00000394943 PGK1P00558 417 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 PIGRP01833 764 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 ABCD1P33897 745 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 PRKCEQ02156 737 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 NBPF20Q3BBV1 942 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 SAMD1Q6SPF0 538 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-202ENST00000394943 SPIRE2Q8WWL2 714 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 TMEM106CQ9BVX2 250 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 FTOQ9C0B1 505 aaKnown RBP eCLIP7.85□□□□□ -1.15
LIMA1-202ENST00000394943 XPNPEP1Q9NQW7 623 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 CYP26B1Q9NR63 512 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 LRWD1Q9UFC0 647 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 PPP1R37O75864 691 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 GNAT1P11488 350 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 ENPEPQ07075 957 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 CSPP1Q1MSJ5 1256 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 LRRC26Q2I0M4 334 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 ARSHQ5FYA8 562 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 GDF6Q6KF10 455 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-202ENST00000394943 ZNF410Q86VK4 478 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 NRBP2Q9NSY0 501 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 TRIP12Q14669 1992 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-202ENST00000394943 ASAP2O43150 1006 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 ADRB2P07550 413 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 CYP11B2P19099 503 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 PTGS1P23219 599 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 YWHABP31946 246 aaKnown RBP7.85□□□□□ -1.15
LIMA1-202ENST00000394943 SARSP49591 514 aaKnown RBP7.85□□□□□ -1.15
LIMA1-202ENST00000394943 GRIK4Q16099 956 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 NFIL3Q16649 462 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 LMBR1Q8WVP7 490 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 DNAJC19Q96DA6 116 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 MTRQ99707 1265 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 SENP6Q9GZR1 1112 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-202ENST00000394943 GABBR1Q9UBS5 961 aa7.85□□□□□ -1.15
LIMA1-202ENST00000394943 POTEB3A0JP26 581 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 POTEMA6NI47 508 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 DGAT1O75907 488 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 PFKMP08237 780 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 TECP42680 631 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 NCKAP1LP55160 1127 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 IRX5P78411 483 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-202ENST00000394943 BEX3Q00994 111 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 GNASQ5JWF2 1037 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 SWSAP1Q6NVH7 229 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 POTEBQ6S5H4 581 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 OTUD6AQ7L8S5 288 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 ZC3H3Q8IXZ2 948 aaKnown RBP7.84□□□□□ -1.15
LIMA1-202ENST00000394943 HVCN1Q96D96 273 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 NOC4LQ9BVI4 516 aaKnown RBP7.84□□□□□ -1.15
LIMA1-202ENST00000394943 LMBRD1Q9NUN5 540 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 UBE4BO95155 1302 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 C17orf102A2RUQ5 167 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 B4GALT4O60513 344 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 EN2P19622 333 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-202ENST00000394943 TXKP42681 527 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 BMT2Q1RMZ1 405 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 KIAA0753Q2KHM9 967 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 EPM2AIP1Q7L775 607 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-202ENST00000394943 EEPD1Q7L9B9 569 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 KCNK18Q7Z418 384 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 CABP7Q86V35 215 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 DAW1Q8N136 415 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 USP38Q8NB14 1042 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 DIS3LQ8TF46 1054 aaKnown RBP7.84□□□□□ -1.15
LIMA1-202ENST00000394943 SYMPKQ92797 1274 aaKnown RBP7.84□□□□□ -1.15
LIMA1-202ENST00000394943 TMEM134Q9H6X4 195 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 KCNG1Q9UIX4 513 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 C6orf222P0C671 652 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-202ENST00000394943 DSC3Q14574 896 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 IER5Q5VY09 327 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 FAM173BQ6P4H8 233 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 SLC17A8Q8NDX2 589 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 GLT1D1Q96MS3 346 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 GTPBP4Q9BZE4 634 aaKnown RBP7.84□□□□□ -1.15
LIMA1-202ENST00000394943 OLFML3Q9NRN5 406 aa7.84□□□□□ -1.15
LIMA1-202ENST00000394943 FNDC1Q4ZHG4 1894 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-202ENST00000394943 SLFN14P0C7P3 912 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 KCNB1Q14721 858 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 KRT79Q5XKE5 535 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 FERMT3Q86UX7 667 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 KIAA0319LQ8IZA0 1049 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 GJA10Q969M2 543 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 GOLPH3LQ9H4A5 285 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 HDAC6Q9UBN7 1215 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 SEL1LQ9UBV2 794 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 STYXL1Q9Y6J8 313 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 SCN5AQ14524 2016 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 PVALEFA0A1B0GWK0 134 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 KLRC4O43908 158 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 TFRCP02786 760 aaKnown RBP7.83□□□□□ -1.16
LIMA1-202ENST00000394943 ZNF286BP0CG31 522 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 INSRRP14616 1297 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 UBE2HP62256 183 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 GNL2Q13823 731 aaKnown RBP7.83□□□□□ -1.16
LIMA1-202ENST00000394943 AMHR2Q16671 573 aa7.83□□□□□ -1.16
LIMA1-202ENST00000394943 MCTP1Q6DN14 999 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms