RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 CRYGNQ8WXF5 182 aa10.9□□□□□ -0.66
COL17A1-203ENST00000393211 CENPTQ96BT3 561 aa10.9□□□□□ -0.66
COL17A1-203ENST00000393211 RBM17Q96I25 401 aaKnown RBP10.9□□□□□ -0.66
COL17A1-203ENST00000393211 ANO3Q9BYT9 981 aa10.9□□□□□ -0.66
COL17A1-203ENST00000393211 RAB17Q9H0T7 212 aa10.9□□□□□ -0.66
COL17A1-203ENST00000393211 VCPKMTQ9H867 229 aa10.9□□□□□ -0.66
COL17A1-203ENST00000393211 GEMIN8Q9NWZ8 242 aaKnown RBP10.9□□□□□ -0.66
COL17A1-203ENST00000393211 AMFRQ9UKV5 643 aa10.9□□□□□ -0.66
COL17A1-203ENST00000393211 UTP11Q9Y3A2 253 aaKnown RBP10.9□□□□□ -0.66
COL17A1-203ENST00000393211 BTAF1O14981 1849 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 TAF1LQ8IZX4 1826 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 GOLGA6L7A0A1B0GV03 622 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 E7EVH7 732 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 H0YHG0 523 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 EIF3DO15371 548 aaKnown RBP eCLIP10.89□□□□□ -0.67
COL17A1-203ENST00000393211 PPP1R12BO60237 982 aaPredicted RBP10.89□□□□□ -0.67
COL17A1-203ENST00000393211 TMEM253P0C7T8 217 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 GBP1P32455 592 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 RFC4P35249 363 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 PPP2R2AP63151 447 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 SPIRE1Q08AE8 756 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 SLC15A2Q16348 729 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 CCDC24Q8N4L8 307 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 SLC30A5Q8TAD4 765 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 ETNPPLQ8TBG4 499 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 MKL1Q969V6 931 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 VTI1AQ96AJ9 217 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 CYFIP2Q96F07 1278 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 MKNK1Q9BUB5 465 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 POLR3CQ9BUI4 534 aaPredicted RBP10.89□□□□□ -0.67
COL17A1-203ENST00000393211 SIX2Q9NPC8 291 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 OLFML3Q9NRN5 406 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 UBE4BO95155 1302 aa10.89□□□□□ -0.67
COL17A1-203ENST00000393211 NPHP3-ACAD11A0A0J9YXS1 232 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 FAM187AA6NFU0 413 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 TMCO5BA8MYB1 307 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 USP17L10C9JJH3 530 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 MYO1FO00160 1098 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 PPFIA2O75334 1257 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 NR3C1P04150 777 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 HLA-DOAP06340 250 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 ACTN1P12814 892 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 CIITAP33076 1130 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 DNA2P51530 1060 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 DRG2P55039 364 aaKnown RBP10.88□□□□□ -0.67
COL17A1-203ENST00000393211 TRADDQ15628 312 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 TRAPPC3LQ5T215 181 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 KCNV1Q6PIU1 500 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 CCDC121Q6ZUS5 278 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 TMC3Q7Z5M5 1100 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 SFR1Q86XK3 245 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 CATSPER3Q86XQ3 398 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 GPIHBP1Q8IV16 184 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 CCDC50Q8IVM0 306 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 RBM46Q8TBY0 533 aaKnown RBP10.88□□□□□ -0.67
COL17A1-203ENST00000393211 RFFLQ8WZ73 363 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 SLC35C1Q96A29 364 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 NCAPGQ9BPX3 1015 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 RABEP2Q9H5N1 569 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.88□□□□□ -0.67
COL17A1-203ENST00000393211 CCNL1Q9UK58 526 aaPredicted RBP10.88□□□□□ -0.67
COL17A1-203ENST00000393211 LRRC37AA6NMS7 1700 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 LY75O60449 1722 aa10.88□□□□□ -0.67
COL17A1-203ENST00000393211 DDX3XO00571 662 aaKnown RBP eCLIP10.87□□□□□ -0.67
COL17A1-203ENST00000393211 AKAP3O75969 853 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 EYA4O95677 639 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 SPATA31C1P0DKV0 1188 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 HSPA6P17066 643 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 RFX1P22670 979 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 HOXA10P31260 410 aaPredicted RBP10.87□□□□□ -0.67
COL17A1-203ENST00000393211 SHMT1P34896 483 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 HOXD13P35453 343 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 MMP14P50281 582 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 MNAT1P51948 309 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 HADHBP55084 474 aaKnown RBP10.87□□□□□ -0.67
COL17A1-203ENST00000393211 RNASE9P60153 205 aaKnown RBP10.87□□□□□ -0.67
COL17A1-203ENST00000393211 PTENP60484 403 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 ARHGAP4P98171 946 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 HDLBPQ00341 1268 aaKnown RBP10.87□□□□□ -0.67
COL17A1-203ENST00000393211 POU5F1Q01860 360 aaKnown RBP10.87□□□□□ -0.67
COL17A1-203ENST00000393211 DHX34Q14147 1143 aaKnown RBP10.87□□□□□ -0.67
COL17A1-203ENST00000393211 TCEAL1Q15170 157 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 LACTB2Q53H82 288 aaPredicted RBP10.87□□□□□ -0.67
COL17A1-203ENST00000393211 FBXW10Q5XX13 1052 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 TTBK2Q6IQ55 1244 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 DAAM2Q86T65 1068 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 HOOK3Q86VS8 718 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 BORCS6Q96GS4 357 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 REEP2Q9BRK0 252 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 STK33Q9BYT3 514 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 TXLNGYQ9BZA5 131 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 COA1Q9GZY4 146 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 CARD9Q9H257 536 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 NYAP2Q9P242 653 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 PCDHA1Q9Y5I3 950 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 ASTN1O14525 1302 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 LTBP1Q14766 1721 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 GOLGA6L10A0A0M3HER8 536 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 POTEFA5A3E0 1075 aa10.87□□□□□ -0.67
COL17A1-203ENST00000393211 F8VZ95 297 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms