RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 KIAA0319LQ8IZA0 1049 aa18.81■□□□□ 0.6
PTPRK-208ENST00000392449 CRIPAKQ8N1N5 446 aa18.81■□□□□ 0.6
PTPRK-208ENST00000392449 BANK1Q8NDB2 785 aa18.81■□□□□ 0.6
PTPRK-208ENST00000392449 TNPO1Q92973 898 aaKnown RBP18.81■□□□□ 0.6
PTPRK-208ENST00000392449 ZNF689Q96CS4 500 aaPredicted RBP18.81■□□□□ 0.6
PTPRK-208ENST00000392449 AIFM3Q96NN9 605 aa18.81■□□□□ 0.6
PTPRK-208ENST00000392449 RAPGEFL1Q9UHV5 662 aa18.81■□□□□ 0.6
PTPRK-208ENST00000392449 MGEA5O60502 916 aa18.8■□□□□ 0.6
PTPRK-208ENST00000392449 NFX1Q12986 1120 aaKnown RBP18.8■□□□□ 0.6
PTPRK-208ENST00000392449 ZNF746Q6NUN9 644 aaPredicted RBP18.8■□□□□ 0.6
PTPRK-208ENST00000392449 CCDC148Q8NFR7 591 aa18.8■□□□□ 0.6
PTPRK-208ENST00000392449 KHSRPQ92945 711 aaKnown RBP eCLIP18.8■□□□□ 0.62e-6■■□□□ 14.3
PTPRK-208ENST00000392449 TBC1D22BQ9NU19 505 aa18.8■□□□□ 0.6
PTPRK-208ENST00000392449 GABBR1Q9UBS5 961 aa18.8■□□□□ 0.6
PTPRK-208ENST00000392449 NOC2LQ9Y3T9 749 aaKnown RBP18.8■□□□□ 0.6
PTPRK-208ENST00000392449 MRPL42Q9Y6G3 142 aaKnown RBP18.8■□□□□ 0.6
PTPRK-208ENST00000392449 H3BQ06 376 aaPredicted RBP18.79■□□□□ 0.6
PTPRK-208ENST00000392449 C22orf31O95567 290 aa18.79■□□□□ 0.6
PTPRK-208ENST00000392449 RPLP2P05387 115 aaKnown RBP18.79■□□□□ 0.6
PTPRK-208ENST00000392449 CIITAP33076 1130 aa18.79■□□□□ 0.6
PTPRK-208ENST00000392449 BMPR1AP36894 532 aa18.79■□□□□ 0.6
PTPRK-208ENST00000392449 KIZQ2M2Z5 673 aa18.79■□□□□ 0.6
PTPRK-208ENST00000392449 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.79■□□□□ 0.6
PTPRK-208ENST00000392449 CD320Q9NPF0 282 aa18.79■□□□□ 0.6
PTPRK-208ENST00000392449 SAMM50Q9Y512 469 aa18.79■□□□□ 0.6
PTPRK-208ENST00000392449 MAFBQ9Y5Q3 323 aaPredicted RBP18.79■□□□□ 0.6
PTPRK-208ENST00000392449 CYP46A1Q9Y6A2 500 aa18.79■□□□□ 0.6
PTPRK-208ENST00000392449 SQORQ9Y6N5 450 aa18.79■□□□□ 0.6
PTPRK-208ENST00000392449 KDM3AQ9Y4C1 1321 aa18.79■□□□□ 0.6
PTPRK-208ENST00000392449 COL1A2P08123 1366 aa18.79■□□□□ 0.6
PTPRK-208ENST00000392449 MSH4O15457 936 aa18.78■□□□□ 0.6
PTPRK-208ENST00000392449 CHMP2AO43633 222 aa18.78■□□□□ 0.6
PTPRK-208ENST00000392449 VTNP04004 478 aa18.78■□□□□ 0.6
PTPRK-208ENST00000392449 NLRP5P59047 1200 aa18.78■□□□□ 0.6
PTPRK-208ENST00000392449 TIGD5Q53EQ6 642 aa18.78■□□□□ 0.6
PTPRK-208ENST00000392449 ZNF484Q5JVG2 852 aa18.78■□□□□ 0.6
PTPRK-208ENST00000392449 MCTP2Q6DN12 878 aa18.78■□□□□ 0.6
PTPRK-208ENST00000392449 EP400NLQ6ZTU2 488 aa18.78■□□□□ 0.6
PTPRK-208ENST00000392449 NME8Q8N427 588 aa18.78■□□□□ 0.6
PTPRK-208ENST00000392449 METTL13Q8N6R0 699 aa18.78■□□□□ 0.6
PTPRK-208ENST00000392449 BICD2Q8TD16 824 aa18.78■□□□□ 0.6
PTPRK-208ENST00000392449 CLP1Q92989 425 aaKnown RBP18.78■□□□□ 0.6
PTPRK-208ENST00000392449 OSMRQ99650 979 aa18.78■□□□□ 0.6
PTPRK-208ENST00000392449 ERVK-5Q9HDB9 667 aa18.78■□□□□ 0.6
PTPRK-208ENST00000392449 TCEAL9Q9UHQ7 104 aa18.78■□□□□ 0.6
PTPRK-208ENST00000392449 PCDHA10Q9Y5I2 948 aa18.78■□□□□ 0.6
PTPRK-208ENST00000392449 C5orf67F2Z3F1 127 aa18.77■□□□□ 0.6
PTPRK-208ENST00000392449 ZNF862O60290 1169 aa18.77■□□□□ 0.6
PTPRK-208ENST00000392449 PSAPP07602 524 aa18.77■□□□□ 0.6
PTPRK-208ENST00000392449 IL9P15248 144 aa18.77■□□□□ 0.6
PTPRK-208ENST00000392449 CLCN3P51790 818 aa18.77■□□□□ 0.6
PTPRK-208ENST00000392449 SSRP1Q08945 709 aaKnown RBP18.77■□□□□ 0.6
PTPRK-208ENST00000392449 UGCGQ16739 394 aa18.77■□□□□ 0.6
PTPRK-208ENST00000392449 NPAS4Q8IUM7 802 aa18.77■□□□□ 0.6
PTPRK-208ENST00000392449 SMAP1Q8IYB5 467 aaPredicted RBP18.77■□□□□ 0.6
PTPRK-208ENST00000392449 BBXQ8WY36 941 aaPredicted RBP18.77■□□□□ 0.6
PTPRK-208ENST00000392449 FTHL17Q9BXU8 183 aa18.77■□□□□ 0.6
PTPRK-208ENST00000392449 NSUN3Q9H649 340 aaKnown RBP18.77■□□□□ 0.6
PTPRK-208ENST00000392449 ALG13Q9NP73 1137 aaKnown RBP18.77■□□□□ 0.6
PTPRK-208ENST00000392449 C5orf42Q9H799 3197 aa18.77■□□□□ 0.6
PTPRK-208ENST00000392449 RPS6KA5O75582 802 aa18.77■□□□□ 0.59
PTPRK-208ENST00000392449 LEXMQ3ZCV2 418 aa18.77■□□□□ 0.59
PTPRK-208ENST00000392449 TRIM22Q8IYM9 498 aa18.77■□□□□ 0.59
PTPRK-208ENST00000392449 TBCKQ8TEA7 893 aa18.77■□□□□ 0.59
PTPRK-208ENST00000392449 ZNF668Q96K58 619 aaPredicted RBP18.77■□□□□ 0.59
PTPRK-208ENST00000392449 C11orf84Q9BUA3 381 aaPredicted RBP18.77■□□□□ 0.59
PTPRK-208ENST00000392449 EPHX3Q9H6B9 360 aa18.77■□□□□ 0.59
PTPRK-208ENST00000392449 ST3GAL5Q9UNP4 418 aa18.77■□□□□ 0.59
PTPRK-208ENST00000392449 TDP2O95551 362 aa18.76■□□□□ 0.59
PTPRK-208ENST00000392449 COL9A1P20849 921 aa18.76■□□□□ 0.59
PTPRK-208ENST00000392449 GTF2F1P35269 517 aaKnown RBP eCLIP18.76■□□□□ 0.591e-7■■■■■ 27.7
PTPRK-208ENST00000392449 NPY5RQ15761 445 aa18.76■□□□□ 0.59
PTPRK-208ENST00000392449 LRRC71Q8N4P6 559 aa18.76■□□□□ 0.59
PTPRK-208ENST00000392449 UNC45AQ9H3U1 944 aa18.76■□□□□ 0.59
PTPRK-208ENST00000392449 SH3GLB2Q9NR46 395 aa18.76■□□□□ 0.59
PTPRK-208ENST00000392449 DISC1Q9NRI5 854 aa18.76■□□□□ 0.59
PTPRK-208ENST00000392449 HCSTQ9UBK5 93 aa18.76■□□□□ 0.59
PTPRK-208ENST00000392449 PCDHA4Q9UN74 947 aa18.76■□□□□ 0.59
PTPRK-208ENST00000392449 FNDC1Q4ZHG4 1894 aaPredicted RBP18.75■□□□□ 0.59
PTPRK-208ENST00000392449 PLXNA4Q9HCM2 1894 aa18.75■□□□□ 0.59
PTPRK-208ENST00000392449 WDR64B1ANS9 1081 aa18.75■□□□□ 0.59
PTPRK-208ENST00000392449 CPLX1O14810 134 aa18.75■□□□□ 0.59
PTPRK-208ENST00000392449 GAS7O60861 476 aa18.75■□□□□ 0.59
PTPRK-208ENST00000392449 GPR32O75388 356 aa18.75■□□□□ 0.59
PTPRK-208ENST00000392449 RB1P06400 928 aa18.75■□□□□ 0.59
PTPRK-208ENST00000392449 DNAJB1P25685 340 aa18.75■□□□□ 0.59
PTPRK-208ENST00000392449 PRKCEQ02156 737 aa18.75■□□□□ 0.59
PTPRK-208ENST00000392449 CAMK1Q14012 370 aa18.75■□□□□ 0.59
PTPRK-208ENST00000392449 PTCRAQ6ISU1 281 aaPredicted RBP18.75■□□□□ 0.59
PTPRK-208ENST00000392449 FAM228AQ86W67 206 aa18.75■□□□□ 0.59
PTPRK-208ENST00000392449 CMTR2Q8IYT2 770 aaKnown RBP18.75■□□□□ 0.59
PTPRK-208ENST00000392449 NEK9Q8TD19 979 aa18.75■□□□□ 0.59
PTPRK-208ENST00000392449 SLC5A5Q92911 643 aa18.75■□□□□ 0.59
PTPRK-208ENST00000392449 ZNF274Q96GC6 653 aaPredicted RBP18.75■□□□□ 0.59
PTPRK-208ENST00000392449 ADAM2Q99965 735 aa18.75■□□□□ 0.59
PTPRK-208ENST00000392449 PDRG1Q9NUG6 133 aa18.75■□□□□ 0.59
PTPRK-208ENST00000392449 CLDND1Q9NY35 253 aa18.75■□□□□ 0.59
PTPRK-208ENST00000392449 LRFN2Q9ULH4 789 aa18.75■□□□□ 0.59
PTPRK-208ENST00000392449 TMEM150BA6NC51 233 aa18.74■□□□□ 0.59
PTPRK-208ENST00000392449 M0R2N6 131 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms