RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PPP1R12BO60237 982 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-204ENST00000392003 GCNT3O95395 438 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 EYA4O95677 639 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 FAM86B2P0C5J1 330 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 GAP43P17677 238 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 GFPT1Q06210 699 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-204ENST00000392003 ARSHQ5FYA8 562 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 FRMD5Q7Z6J6 570 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 MSL3Q8N5Y2 521 aaKnown RBP10.56□□□□□ -0.72
COL6A3-204ENST00000392003 ANKRD13CQ8N6S4 541 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 EIF2AK1Q9BQI3 630 aaKnown RBP10.56□□□□□ -0.72
COL6A3-204ENST00000392003 POLR3CQ9BUI4 534 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-204ENST00000392003 ZCCHC17Q9NP64 241 aaKnown RBP10.56□□□□□ -0.72
COL6A3-204ENST00000392003 FRMD3A2A2Y4 597 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 PDXKO00764 312 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 ZNF185O15231 689 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 PJA2O43164 708 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 AFPP02771 609 aaKnown RBP10.56□□□□□ -0.72
COL6A3-204ENST00000392003 XRCC5P13010 732 aaKnown RBP10.56□□□□□ -0.72
COL6A3-204ENST00000392003 PRLRP16471 622 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 PSMC6P62333 389 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 R3HDM1Q15032 1099 aaKnown RBP10.56□□□□□ -0.72
COL6A3-204ENST00000392003 AGBL3Q8NEM8 1001 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 ACER1Q8TDN7 264 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 UBXN6Q9BZV1 441 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 MRPL11Q9Y3B7 192 aaKnown RBP10.56□□□□□ -0.72
COL6A3-204ENST00000392003 CAPN6Q9Y6Q1 641 aa10.56□□□□□ -0.72
COL6A3-204ENST00000392003 NRXN2Q9P2S2 1712 aa10.55□□□□□ -0.72
COL6A3-204ENST00000392003 PRPF6O94906 941 aaKnown RBP10.55□□□□□ -0.72
COL6A3-204ENST00000392003 CYP3A4P08684 503 aa10.55□□□□□ -0.72
COL6A3-204ENST00000392003 ECE1P42892 770 aa10.55□□□□□ -0.72
COL6A3-204ENST00000392003 TGFB2P61812 414 aa10.55□□□□□ -0.72
COL6A3-204ENST00000392003 DCAF17Q5H9S7 520 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-204ENST00000392003 STXBP4Q6ZWJ1 553 aa10.55□□□□□ -0.72
COL6A3-204ENST00000392003 BUB1O43683 1085 aa10.55□□□□□ -0.72
COL6A3-204ENST00000392003 SPATA31C1P0DKV0 1188 aa10.55□□□□□ -0.72
COL6A3-204ENST00000392003 SPIRE1Q08AE8 756 aa10.55□□□□□ -0.72
COL6A3-204ENST00000392003 EXOC3L4Q17RC7 722 aa10.55□□□□□ -0.72
COL6A3-204ENST00000392003 TPH2Q8IWU9 490 aa10.55□□□□□ -0.72
COL6A3-204ENST00000392003 CRYGNQ8WXF5 182 aa10.55□□□□□ -0.72
COL6A3-204ENST00000392003 TBC1D5Q92609 795 aa10.55□□□□□ -0.72
COL6A3-204ENST00000392003 OSBPL9Q96SU4 736 aa10.55□□□□□ -0.72
COL6A3-204ENST00000392003 TSPYL2Q9H2G4 693 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-204ENST00000392003 TYW1Q9NV66 732 aaKnown RBP10.55□□□□□ -0.72
COL6A3-204ENST00000392003 VPS18Q9P253 973 aa10.55□□□□□ -0.72
COL6A3-204ENST00000392003 TRAF3IP3Q9Y228 551 aa10.55□□□□□ -0.72
COL6A3-204ENST00000392003 SLX4Q8IY92 1834 aa10.55□□□□□ -0.72
COL6A3-204ENST00000392003 EME2A4GXA9 379 aaPredicted RBP10.54□□□□□ -0.72
COL6A3-204ENST00000392003 PIK3CDO00329 1044 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 TPD52L2O43399 206 aaKnown RBP10.54□□□□□ -0.72
COL6A3-204ENST00000392003 CHMP2AO43633 222 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 C2orf54Q08AI8 447 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 TNFAIP1Q13829 316 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 SPDYE2Q495Y8 402 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 VPS36Q86VN1 386 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 SUGCTQ9HAC7 445 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 ZBTB21Q9ULJ3 1066 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 COL11A2P13942 1736 aaPredicted RBP10.54□□□□□ -0.72
COL6A3-204ENST00000392003 A0A1W2PRG0 241 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 GAS7O60861 476 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 MATR3P43243 847 aaKnown RBP eCLIP10.54□□□□□ -0.72
COL6A3-204ENST00000392003 MYCT1Q8N699 235 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 FAM133AQ8N9E0 248 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 LENG9Q96B70 501 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 PSMB7Q99436 277 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 TUFT1Q9NNX1 390 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 RGL1Q9NZL6 768 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 BZW2Q9Y6E2 419 aaKnown RBP10.54□□□□□ -0.72
COL6A3-204ENST00000392003 AP1G2O75843 785 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 NR3C1P04150 777 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 MYBP10242 640 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 RASA3Q14644 834 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 SLC18A3Q16572 532 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 IFI16Q16666 785 aaKnown RBP10.54□□□□□ -0.72
COL6A3-204ENST00000392003 GBP6Q6ZN66 633 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 TSHZ1Q6ZSZ6 1077 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 FAM71BQ8TC56 605 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 TAF4BQ92750 862 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 P2RX7Q99572 595 aaKnown RBP10.54□□□□□ -0.72
COL6A3-204ENST00000392003 MTFR1LQ9H019 292 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 MYOZ2Q9NPC6 264 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 TMX2Q9Y320 296 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 ARFGEF1Q9Y6D6 1849 aa10.54□□□□□ -0.72
COL6A3-204ENST00000392003 NOL4O94818 638 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 ASNSP08243 561 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 TAL1P17542 331 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-204ENST00000392003 CASP5P51878 434 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 CTTNQ14247 550 aaKnown RBP10.53□□□□□ -0.72
COL6A3-204ENST00000392003 KIAA0753Q2KHM9 967 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 ASTE1Q2TB18 679 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-204ENST00000392003 CFAP221Q4G0U5 840 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 TBC1D10BQ4KMP7 808 aaPredicted RBP10.53□□□□□ -0.72
COL6A3-204ENST00000392003 HGSNATQ68CP4 663 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 FAM160B2Q86V87 743 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 ZC3H3Q8IXZ2 948 aaKnown RBP10.53□□□□□ -0.72
COL6A3-204ENST00000392003 MMGT1Q8N4V1 131 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 EXOC4Q96A65 974 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 WDR11Q9BZH6 1224 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 RNF14Q9UBS8 474 aa10.53□□□□□ -0.72
COL6A3-204ENST00000392003 VAV3Q9UKW4 847 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms