RNA–Protein interactions for RNA: ENST00000377865.6

PCDH9-202, Transcript of protocadherin 9, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PCDH9, Length 5,709 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-202ENST00000377865 CNKSR2Q8WXI2 1034 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 MS4A14Q96JA4 679 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 SERPINA10Q9UK55 444 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 CCNL1Q9UK58 526 aaPredicted RBP9.45□□□□□ -0.9
PCDH9-202ENST00000377865 ITIH4Q14624 930 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 PDXDC2PQ6P474 469 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 APBB1IPQ7Z5R6 666 aaPredicted RBP9.45□□□□□ -0.9
PCDH9-202ENST00000377865 HAUS1Q96CS2 278 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 ANO3Q9BYT9 981 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 INTUQ9ULD6 942 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 TMEM94Q12767 1356 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 SETD1BQ9UPS6 1966 aaKnown RBP9.45□□□□□ -0.9
PCDH9-202ENST00000377865 LOC102724428A0A0B4J2F2 783 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 TXNDC9O14530 226 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 RAD51CO43502 376 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 ATF7P17544 494 aaPredicted RBP9.45□□□□□ -0.9
PCDH9-202ENST00000377865 TNNI1P19237 187 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 TNFRSF8P28908 595 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 SIK1P57059 783 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 APLFQ8IW19 511 aaPredicted RBP9.45□□□□□ -0.9
PCDH9-202ENST00000377865 SENP2Q9HC62 589 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.45□□□□□ -0.9
PCDH9-202ENST00000377865 ARHGAP42A6NI28 874 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 MSH2P43246 934 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 MDM2Q00987 491 aaPredicted RBP9.45□□□□□ -0.9
PCDH9-202ENST00000377865 SNX1Q13596 522 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 CERKLQ49MI3 558 aaPredicted RBP9.45□□□□□ -0.9
PCDH9-202ENST00000377865 CLEC4GQ6UXB4 293 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 DCAF4Q8WV16 495 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 CENPKQ9BS16 269 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 TMBIM4Q9HC24 238 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 STOML1Q9UBI4 398 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 ARL2BPQ9Y2Y0 163 aa9.45□□□□□ -0.9
PCDH9-202ENST00000377865 SLIT3O75094 1523 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 CACNA1FO60840 1977 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 POTEMA6NI47 508 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 IPO5O00410 1097 aaKnown RBP9.44□□□□□ -0.9
PCDH9-202ENST00000377865 DAPK3O43293 454 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 PHF2O75151 1096 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 INHBAP08476 426 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 CCND1P24385 295 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 SOX5P35711 763 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 DYNC1I2Q13409 638 aaKnown RBP9.44□□□□□ -0.9
PCDH9-202ENST00000377865 UBE2SQ16763 222 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 RASIP1Q5U651 963 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 TRMT10CQ7L0Y3 403 aaKnown RBP9.44□□□□□ -0.9
PCDH9-202ENST00000377865 MCF2L2Q86YR7 1114 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 SNF8Q96H20 258 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 MOV10L1Q9BXT6 1211 aaKnown RBP9.44□□□□□ -0.9
PCDH9-202ENST00000377865 AKAP12Q02952 1782 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 BAG2O95816 211 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 CYP4A11Q02928 519 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 ICA1Q05084 483 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 NTRK3Q16288 839 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 EPM2AIP1Q7L775 607 aaPredicted RBP9.44□□□□□ -0.9
PCDH9-202ENST00000377865 ARMC2Q8NEN0 867 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 AENQ8WTP8 325 aaKnown RBP9.44□□□□□ -0.9
PCDH9-202ENST00000377865 MIS12Q9H081 205 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 TPX2Q9ULW0 747 aaKnown RBP9.44□□□□□ -0.9
PCDH9-202ENST00000377865 PLAGL2Q9UPG8 496 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 LRRN2O75325 713 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 CYP2D6P10635 497 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 PLS3P13797 630 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 CHN1P15882 459 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 POLR2BP30876 1174 aaKnown RBP9.44□□□□□ -0.9
PCDH9-202ENST00000377865 SKOR1P84550 965 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 HDLBPQ00341 1268 aaKnown RBP9.44□□□□□ -0.9
PCDH9-202ENST00000377865 TBC1D9BQ66K14 1250 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 ZNF662Q6ZS27 426 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 CENPUQ71F23 418 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 NLRX1Q86UT6 975 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 TGS1Q96RS0 853 aaKnown RBP9.44□□□□□ -0.9
PCDH9-202ENST00000377865 ROPN1BQ9BZX4 212 aaPredicted RBP9.44□□□□□ -0.9
PCDH9-202ENST00000377865 ROPN1Q9HAT0 212 aaPredicted RBP9.44□□□□□ -0.9
PCDH9-202ENST00000377865 SUCLA2Q9P2R7 463 aaPredicted RBP9.44□□□□□ -0.9
PCDH9-202ENST00000377865 PACSIN2Q9UNF0 486 aaPredicted RBP9.44□□□□□ -0.9
PCDH9-202ENST00000377865 CCT8L1PA6NM43 557 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 CES2O00748 559 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 PDXKO00764 312 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 NMT2O60551 498 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 PIK3CAP42336 1068 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 PCGF5Q86SE9 256 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 SFR1Q86XK3 245 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 PDCD7Q8N8D1 485 aaKnown RBP9.44□□□□□ -0.9
PCDH9-202ENST00000377865 SH3GL3Q99963 347 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 SEL1LQ9UBV2 794 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 PPP1R9AQ9ULJ8 1098 aa9.44□□□□□ -0.9
PCDH9-202ENST00000377865 SRRM3A6NNA2 597 aaPredicted RBP9.43□□□□□ -0.9
PCDH9-202ENST00000377865 ACSL3O95573 720 aa9.43□□□□□ -0.9
PCDH9-202ENST00000377865 IFNB1P01574 187 aa9.43□□□□□ -0.9
PCDH9-202ENST00000377865 GSTA1P08263 222 aa9.43□□□□□ -0.9
PCDH9-202ENST00000377865 CARSP49589 748 aaKnown RBP9.43□□□□□ -0.9
PCDH9-202ENST00000377865 KIAA1755Q5JYT7 1200 aa9.43□□□□□ -0.9
PCDH9-202ENST00000377865 CAPRIN2Q6IMN6 1127 aaKnown RBP9.43□□□□□ -0.9
PCDH9-202ENST00000377865 TMC4Q7Z404 712 aa9.43□□□□□ -0.9
PCDH9-202ENST00000377865 SPATA21Q7Z572 469 aa9.43□□□□□ -0.9
PCDH9-202ENST00000377865 ARHGAP18Q8N392 663 aa9.43□□□□□ -0.9
PCDH9-202ENST00000377865 RAB3IL1Q8TBN0 382 aa9.43□□□□□ -0.9
PCDH9-202ENST00000377865 INTS2Q9H0H0 1204 aaKnown RBP9.43□□□□□ -0.9
PCDH9-202ENST00000377865 SCINQ9Y6U3 715 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms