RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 STAMQ92783 540 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 PMS2P54278 862 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 SLC30A9Q6PML9 568 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 ZNF654Q8IZM8 581 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 ALKBH8Q96BT7 664 aaKnown RBP12.42□□□□□ -0.42
VPS13A-205ENST00000376636 SENP1Q9P0U3 644 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 E7EWF7 191 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 KIAA1841Q6NSI8 718 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 FAM32AQ9Y421 112 aaKnown RBP12.42□□□□□ -0.42
VPS13A-205ENST00000376636 ACEP12821 1306 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 RHOBTB1O94844 696 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 CDC27P30260 824 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 TRIP4Q15650 581 aaPredicted RBP12.42□□□□□ -0.42
VPS13A-205ENST00000376636 FAF2Q96CS3 445 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 NHEJ1Q9H9Q4 299 aaPredicted RBP12.42□□□□□ -0.42
VPS13A-205ENST00000376636 FNDC3AQ9Y2H6 1198 aaKnown RBP12.42□□□□□ -0.42
VPS13A-205ENST00000376636 RALBP11234 206 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 VCPP55072 806 aaKnown RBP12.42□□□□□ -0.42
VPS13A-205ENST00000376636 FKBP3Q00688 224 aaKnown RBP12.42□□□□□ -0.42
VPS13A-205ENST00000376636 TRAPPC3LQ5T215 181 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 CCDC103Q8IW40 242 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 ELAC2Q9BQ52 826 aaKnown RBP12.42□□□□□ -0.42
VPS13A-205ENST00000376636 LRRC8EQ6NSJ5 796 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 NFATC2IPQ8NCF5 419 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 PLAAQ9Y263 795 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 MYO1CO00159 1063 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 ABCE1P61221 599 aaKnown RBP12.42□□□□□ -0.42
VPS13A-205ENST00000376636 POTEAQ6S8J7 498 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 TTC13Q8NBP0 860 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 RBM41Q96IZ5 413 aaKnown RBP12.42□□□□□ -0.42
VPS13A-205ENST00000376636 ARHGEF3Q9NR81 526 aa12.42□□□□□ -0.42
VPS13A-205ENST00000376636 NOS1P29475 1434 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 IKBKBO14920 756 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 RECQLP46063 649 aaPredicted RBP12.41□□□□□ -0.42
VPS13A-205ENST00000376636 CTDSPL2Q05D32 466 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 RASSF3Q86WH2 238 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 AKT3Q9Y243 479 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 CDK13Q14004 1512 aaKnown RBP12.41□□□□□ -0.42
VPS13A-205ENST00000376636 HADHAP40939 763 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 TEX2Q8IWB9 1127 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 SH3GL1Q99961 368 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 OSBPL10Q9BXB5 764 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 ZMYND10O75800 440 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 BFSP2Q13515 415 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 GINM1Q9NU53 330 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 TK2O00142 265 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 SUPT3HO75486 399 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 SEC31AO94979 1220 aaKnown RBP12.41□□□□□ -0.42
VPS13A-205ENST00000376636 TBL3Q12788 808 aaKnown RBP12.41□□□□□ -0.42
VPS13A-205ENST00000376636 DCAF15Q66K64 600 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 FBXO18Q8NFZ0 1043 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 RUBCNQ92622 972 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 SIKE1Q9BRV8 207 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 ANGPT2O15123 496 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 ARHGEF6Q15052 776 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 APLFQ8IW19 511 aaPredicted RBP12.41□□□□□ -0.42
VPS13A-205ENST00000376636 ZNF532Q9HCE3 1301 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 PDE8AO60658 829 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 CPA1P15085 419 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 PPARAQ07869 468 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 PIK3R5Q8WYR1 880 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 FAM161BQ96MY7 647 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 YTHDC2Q9H6S0 1430 aaKnown RBP12.41□□□□□ -0.42
VPS13A-205ENST00000376636 TRPM2O94759 1503 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 PLBD2Q8NHP8 589 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 HAUS5O94927 633 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 KLC1Q07866 573 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 RBBP7Q16576 425 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 IFT43Q96FT9 208 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 ACCSQ96QU6 501 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 RWDD2AQ9UIY3 292 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 CXCR5P32302 372 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 CUL3Q13618 768 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 KIAA1024Q9UPX6 916 aa12.41□□□□□ -0.42
VPS13A-205ENST00000376636 RAD23BP54727 409 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 MIS18BP1Q6P0N0 1132 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 TERB1Q8NA31 727 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 PANX2Q96RD6 677 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 MYL10Q9BUA6 226 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 TMEM161AQ9NX61 479 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 DISP3Q9P2K9 1392 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 KITP10721 976 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 AQRO60306 1485 aaKnown RBP eCLIP12.4□□□□□ -0.426e-9■■■■■ 67.2
VPS13A-205ENST00000376636 NDUFA8P51970 172 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 C8orf58Q8NAV2 365 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 PLXNC1O60486 1568 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 ASAP2O43150 1006 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 ACSBG1Q96GR2 724 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 KIF1BO60333 1816 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 CTIFO43310 598 aaKnown RBP12.4□□□□□ -0.42
VPS13A-205ENST00000376636 CSTF3Q12996 717 aaKnown RBP12.4□□□□□ -0.42
VPS13A-205ENST00000376636 TBC1D19Q8N5T2 526 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 EFHBQ8N7U6 833 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 ECT2Q9H8V3 914 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.4□□□□□ -0.42
VPS13A-205ENST00000376636 USP40Q9NVE5 1235 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 G3BP2Q9UN86 482 aaKnown RBP12.4□□□□□ -0.42
VPS13A-205ENST00000376636 SLC44A4Q53GD3 710 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 PI4K2BQ8TCG2 481 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 RSPH1Q8WYR4 309 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms