RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 MTFR1Q15390 333 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 TMEM119Q4V9L6 283 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 PRAMEF19Q5SWL8 479 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 CENPPQ6IPU0 288 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 MCF2L2Q86YR7 1114 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 RETREG2Q8NC44 543 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 HAS1Q92839 578 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 ABHD8Q96I13 439 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 PCMTD1Q96MG8 357 aaPredicted RBP17.18■□□□□ 0.34
CCDC40-202ENST00000374876 SEMA6BQ9H3T3 888 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 COL20A1Q9P218 1284 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 PCDHA12Q9UN75 941 aa17.18■□□□□ 0.34
CCDC40-202ENST00000374876 DIS3Q9Y2L1 958 aaKnown RBP17.18■□□□□ 0.34
CCDC40-202ENST00000374876 ZNF236Q9UL36 1845 aa17.17■□□□□ 0.34
CCDC40-202ENST00000374876 HMGCRP04035 888 aa17.17■□□□□ 0.34
CCDC40-202ENST00000374876 CACNB2Q08289 660 aaPredicted RBP17.17■□□□□ 0.34
CCDC40-202ENST00000374876 FKBP15Q5T1M5 1219 aa17.17■□□□□ 0.34
CCDC40-202ENST00000374876 SYTL5Q8TDW5 730 aaPredicted RBP17.17■□□□□ 0.34
CCDC40-202ENST00000374876 DDX12PQ92771 950 aa17.17■□□□□ 0.34
CCDC40-202ENST00000374876 TINF2Q9BSI4 451 aa17.17■□□□□ 0.34
CCDC40-202ENST00000374876 ZNHIT6Q9NWK9 470 aaKnown RBP17.17■□□□□ 0.34
CCDC40-202ENST00000374876 ZNF446Q9NWS9 450 aa17.17■□□□□ 0.34
CCDC40-202ENST00000374876 MYO1AQ9UBC5 1043 aa17.17■□□□□ 0.34
CCDC40-202ENST00000374876 TUBB2AQ13885 445 aa17.16■□□□□ 0.34
CCDC40-202ENST00000374876 TEX35Q5T0J7 233 aa17.16■□□□□ 0.34
CCDC40-202ENST00000374876 OLFML2BQ68BL8 750 aa17.16■□□□□ 0.34
CCDC40-202ENST00000374876 USP17L6PQ6QN14 398 aa17.16■□□□□ 0.34
CCDC40-202ENST00000374876 SLC35F6Q8N357 371 aa17.16■□□□□ 0.34
CCDC40-202ENST00000374876 GUF1Q8N442 669 aaKnown RBP17.16■□□□□ 0.34
CCDC40-202ENST00000374876 GPR161Q8N6U8 529 aaKnown RBP17.16■□□□□ 0.34
CCDC40-202ENST00000374876 GOLGA1Q92805 767 aa17.16■□□□□ 0.34
CCDC40-202ENST00000374876 ZNF333Q96JL9 665 aa17.16■□□□□ 0.34
CCDC40-202ENST00000374876 TAAR1Q96RJ0 339 aa17.16■□□□□ 0.34
CCDC40-202ENST00000374876 TUBB2BQ9BVA1 445 aa17.16■□□□□ 0.34
CCDC40-202ENST00000374876 FGFR1OPO95684 399 aaKnown RBP17.16■□□□□ 0.34
CCDC40-202ENST00000374876 IGHA2P01877 340 aa17.16■□□□□ 0.34
CCDC40-202ENST00000374876 ARHGAP25P42331 645 aa17.16■□□□□ 0.34
CCDC40-202ENST00000374876 PSMD2Q13200 908 aa17.16■□□□□ 0.34
CCDC40-202ENST00000374876 TMCO3Q6UWJ1 677 aa17.16■□□□□ 0.34
CCDC40-202ENST00000374876 KCNK18Q7Z418 384 aa17.16■□□□□ 0.34
CCDC40-202ENST00000374876 KRT222Q8N1A0 295 aa17.16■□□□□ 0.34
CCDC40-202ENST00000374876 ARMC5Q96C12 935 aa17.16■□□□□ 0.34
CCDC40-202ENST00000374876 KDM3AQ9Y4C1 1321 aa17.15■□□□□ 0.34
CCDC40-202ENST00000374876 PRKAR2AP13861 404 aaKnown RBP17.15■□□□□ 0.34
CCDC40-202ENST00000374876 HSD17B4P51659 736 aa17.15■□□□□ 0.34
CCDC40-202ENST00000374876 UBXN2AP68543 259 aa17.15■□□□□ 0.34
CCDC40-202ENST00000374876 BMS1Q14692 1282 aaKnown RBP17.15■□□□□ 0.34
CCDC40-202ENST00000374876 MIIPQ5JXC2 388 aa17.15■□□□□ 0.34
CCDC40-202ENST00000374876 MFSD14CQ5VZR4 134 aa17.15■□□□□ 0.34
CCDC40-202ENST00000374876 RSRC2Q7L4I2 434 aaKnown RBP17.15■□□□□ 0.34
CCDC40-202ENST00000374876 GJA10Q969M2 543 aa17.15■□□□□ 0.34
CCDC40-202ENST00000374876 TTYH3Q9C0H2 523 aa17.15■□□□□ 0.34
CCDC40-202ENST00000374876 NT5C3AQ9H0P0 336 aa17.15■□□□□ 0.34
CCDC40-202ENST00000374876 CDC23Q9UJX2 597 aa17.15■□□□□ 0.34
CCDC40-202ENST00000374876 LCTP09848 1927 aa17.15■□□□□ 0.34
CCDC40-202ENST00000374876 GCOM1H8Y6P7 765 aaPredicted RBP17.14■□□□□ 0.34
CCDC40-202ENST00000374876 POLR2MP0CAP2 368 aa17.14■□□□□ 0.34
CCDC40-202ENST00000374876 KLK7P49862 253 aa17.14■□□□□ 0.34
CCDC40-202ENST00000374876 USP11P51784 963 aa17.14■□□□□ 0.34
CCDC40-202ENST00000374876 ZBED6P86452 979 aa17.14■□□□□ 0.34
CCDC40-202ENST00000374876 LRRC63Q05C16 580 aa17.14■□□□□ 0.34
CCDC40-202ENST00000374876 WDR59Q6PJI9 974 aa17.14■□□□□ 0.34
CCDC40-202ENST00000374876 RABGGTAQ92696 567 aa17.14■□□□□ 0.34
CCDC40-202ENST00000374876 ERGIC2Q96RQ1 377 aa17.14■□□□□ 0.34
CCDC40-202ENST00000374876 NAPGQ99747 312 aaPredicted RBP17.14■□□□□ 0.34
CCDC40-202ENST00000374876 UNC93B1Q9H1C4 597 aa17.14■□□□□ 0.34
CCDC40-202ENST00000374876 BMP2KQ9NSY1 1161 aaPredicted RBP17.14■□□□□ 0.34
CCDC40-202ENST00000374876 AGPAT5Q9NUQ2 364 aa17.14■□□□□ 0.34
CCDC40-202ENST00000374876 MEIS2O14770 477 aa17.14■□□□□ 0.33
CCDC40-202ENST00000374876 SNAI1O95863 264 aaPredicted RBP17.14■□□□□ 0.33
CCDC40-202ENST00000374876 ABL1P00519 1130 aa17.14■□□□□ 0.33
CCDC40-202ENST00000374876 CCND3P30281 292 aaPredicted RBP17.14■□□□□ 0.33
CCDC40-202ENST00000374876 ALDH5A1P51649 535 aaPredicted RBP17.14■□□□□ 0.33
CCDC40-202ENST00000374876 ECM1Q16610 540 aa17.14■□□□□ 0.33
CCDC40-202ENST00000374876 MEA1Q16626 185 aa17.14■□□□□ 0.33
CCDC40-202ENST00000374876 MAMDC4Q6UXC1 1216 aa17.14■□□□□ 0.33
CCDC40-202ENST00000374876 ARMCX2Q7L311 632 aa17.14■□□□□ 0.33
CCDC40-202ENST00000374876 SRGAP1Q7Z6B7 1085 aa17.14■□□□□ 0.33
CCDC40-202ENST00000374876 CEP112Q8N8E3 955 aa17.14■□□□□ 0.33
CCDC40-202ENST00000374876 TRPV1Q8NER1 839 aa17.14■□□□□ 0.33
CCDC40-202ENST00000374876 TSG101Q99816 390 aa17.14■□□□□ 0.33
CCDC40-202ENST00000374876 ANO3Q9BYT9 981 aa17.14■□□□□ 0.33
CCDC40-202ENST00000374876 CCDC85CA6NKD9 419 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 SSBP05455 408 aaKnown RBP eCLIP17.13■□□□□ 0.33
CCDC40-202ENST00000374876 CCL5P13501 91 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 CHMP4BP1P59074 171 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 KRT83P78385 493 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 VWA3BQ502W6 1294 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 EEPD1Q7L9B9 569 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 IQCDQ96DY2 449 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 RMDN3Q96TC7 470 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 RNF208Q9H0X6 261 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 REXO2Q9Y3B8 237 aaKnown RBP17.13■□□□□ 0.33
CCDC40-202ENST00000374876 MCM3APO60318 1980 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 A0A1W2PQJ5 194 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 CNGA1P29973 690 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 CYLC1P35663 651 aaPredicted RBP17.13■□□□□ 0.33
CCDC40-202ENST00000374876 GHRHRQ02643 423 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 AP3B2Q13367 1082 aa17.13■□□□□ 0.33
CCDC40-202ENST00000374876 FIGNQ5HY92 759 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms