RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 SRGAP2BP0DMP2 458 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 CTNNA1P35221 906 aaKnown RBP10.56□□□□□ -0.72
COL4A6-202ENST00000372216 BLVRAP53004 296 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 FKBP3Q00688 224 aaKnown RBP10.56□□□□□ -0.72
COL4A6-202ENST00000372216 DPCR1Q3MIW9 517 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 KRT71Q3SY84 523 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 PRR5LQ6MZQ0 368 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 DNAJC24Q6P3W2 148 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 ELMSAN1Q6PJG2 1045 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 LRRC8AQ8IWT6 810 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 ZCWPW1Q9H0M4 648 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 OGFRQ9NZT2 677 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 DIP2AQ14689 1571 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 RIMS1Q86UR5 1692 aaKnown RBP10.56□□□□□ -0.72
COL4A6-202ENST00000372216 PGBD3Q8N328 593 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 AFG1LQ8WV93 481 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 DYDC2Q96IM9 177 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 CNOT7Q9UIV1 285 aaKnown RBP10.56□□□□□ -0.72
COL4A6-202ENST00000372216 HACL1Q9UJ83 578 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 SERPINB6P35237 376 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 MXI1P50539 228 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 EHHADHQ08426 723 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 RCN2Q14257 317 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 C11orf57Q6ZUT1 292 aaPredicted RBP10.56□□□□□ -0.72
COL4A6-202ENST00000372216 THNSL1Q8IYQ7 743 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 RPGRIP1Q96KN7 1286 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 TYW1Q9NV66 732 aaKnown RBP10.56□□□□□ -0.72
COL4A6-202ENST00000372216 RGS16O15492 202 aaPredicted RBP10.56□□□□□ -0.72
COL4A6-202ENST00000372216 STX2P32856 288 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 ARL6IP4Q66PJ3 421 aaKnown RBP10.56□□□□□ -0.72
COL4A6-202ENST00000372216 SCN4BQ8IWT1 228 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 OR6B3Q8NGW1 331 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 LRGUKQ96M69 825 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 SPATA33Q96N06 139 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 VCXQ9H320 206 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 ACAD9Q9H845 621 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 LY9Q9HBG7 655 aa10.56□□□□□ -0.72
COL4A6-202ENST00000372216 A0A087WWV3 80 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 WDR64B1ANS9 1081 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 SSTR3P32745 418 aaPredicted RBP10.55□□□□□ -0.72
COL4A6-202ENST00000372216 PHKA2P46019 1235 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 MTMR2Q13614 643 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 THEM5Q8N1Q8 247 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 RNF139Q8WU17 664 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 RSRC1Q96IZ7 334 aaKnown RBP10.55□□□□□ -0.72
COL4A6-202ENST00000372216 PIK3C2BO00750 1634 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 NEXMIFQ5QGS0 1516 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 UPP2O95045 317 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 TRIP13Q15645 432 aaPredicted RBP10.55□□□□□ -0.72
COL4A6-202ENST00000372216 BARGINQ6ZT62 677 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 ARMCX2Q7L311 632 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 MARCH10Q8NA82 808 aaPredicted RBP10.55□□□□□ -0.72
COL4A6-202ENST00000372216 KCTD6Q8NC69 237 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 TSC1Q92574 1164 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 HAUS4Q9H6D7 363 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 HPS4Q9NQG7 708 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 TBC1D22BQ9NU19 505 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 SPATA31A5Q5VU36 1347 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 SPATA31A7Q8IWB4 1347 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 MYO3AQ8NEV4 1616 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 POTEMA6NI47 508 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 GARSP41250 739 aaKnown RBP10.55□□□□□ -0.72
COL4A6-202ENST00000372216 TNFAIP2Q03169 654 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 SUCLA2Q9P2R7 463 aaPredicted RBP10.55□□□□□ -0.72
COL4A6-202ENST00000372216 F5H6K3 240 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 HADHAP40939 763 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 HMGCS2P54868 508 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 KLRC3Q07444 240 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 TOB2Q14106 344 aaPredicted RBP10.55□□□□□ -0.72
COL4A6-202ENST00000372216 ANKRD20A3Q5VUR7 823 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 MRFAP1L1Q96HT8 127 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 TTC25Q96NG3 672 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 PASKQ96RG2 1323 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 OPHN1O60890 802 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 CAMTA2O94983 1202 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 ARL4AP40617 200 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 RAB44Q7Z6P3 723 aaPredicted RBP10.55□□□□□ -0.72
COL4A6-202ENST00000372216 BBOF1Q8ND07 529 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 URGCPQ8TCY9 931 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 SARS2Q9NP81 518 aaKnown RBP10.55□□□□□ -0.72
COL4A6-202ENST00000372216 GDAQ9Y2T3 454 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 EIF3CLB5ME19 914 aaKnown RBP10.55□□□□□ -0.72
COL4A6-202ENST00000372216 LDHAP00338 332 aaKnown RBP10.55□□□□□ -0.72
COL4A6-202ENST00000372216 YWHAHQ04917 246 aaPredicted RBP10.55□□□□□ -0.72
COL4A6-202ENST00000372216 THOC5Q13769 683 aaKnown RBP10.55□□□□□ -0.72
COL4A6-202ENST00000372216 SWSAP1Q6NVH7 229 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 RHPN2Q8IUC4 686 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 KCTD17Q8N5Z5 321 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 HVCN1Q96D96 273 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 EIF3CQ99613 913 aaKnown RBP10.55□□□□□ -0.72
COL4A6-202ENST00000372216 ANLNQ9NQW6 1124 aa10.55□□□□□ -0.72
COL4A6-202ENST00000372216 AKR1B1P15121 316 aa10.54□□□□□ -0.72
COL4A6-202ENST00000372216 SCARF1Q14162 830 aa10.54□□□□□ -0.72
COL4A6-202ENST00000372216 TWF2Q6IBS0 349 aaKnown RBP10.54□□□□□ -0.72
COL4A6-202ENST00000372216 PPP1R2P3Q6NXS1 205 aa10.54□□□□□ -0.72
COL4A6-202ENST00000372216 HERC5Q9UII4 1024 aaKnown RBP10.54□□□□□ -0.72
COL4A6-202ENST00000372216 LMTK2Q8IWU2 1503 aa10.54□□□□□ -0.72
COL4A6-202ENST00000372216 IRX4P78413 519 aa10.54□□□□□ -0.72
COL4A6-202ENST00000372216 KCNA1Q09470 495 aa10.54□□□□□ -0.72
COL4A6-202ENST00000372216 PADI6Q6TGC4 694 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms