RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 TPH2Q8IWU9 490 aa16.9■□□□□ 0.3
SMPDL3A-201ENST00000368440 CEP89Q96ST8 783 aa16.9■□□□□ 0.3
SMPDL3A-201ENST00000368440 DDX11L8A8MPP1 907 aa16.9■□□□□ 0.3
SMPDL3A-201ENST00000368440 MED24O75448 989 aa16.9■□□□□ 0.3
SMPDL3A-201ENST00000368440 TMEM240Q5SV17 173 aa16.9■□□□□ 0.3
SMPDL3A-201ENST00000368440 ZNF365Q70YC5 407 aa16.9■□□□□ 0.3
SMPDL3A-201ENST00000368440 C4orf19Q8IY42 314 aa16.9■□□□□ 0.3
SMPDL3A-201ENST00000368440 TDHQ8IZJ6 230 aa16.9■□□□□ 0.3
SMPDL3A-201ENST00000368440 ZNF579Q8NAF0 562 aaKnown RBP16.9■□□□□ 0.3
SMPDL3A-201ENST00000368440 NIFKQ9BYG3 293 aaKnown RBP16.9■□□□□ 0.3
SMPDL3A-201ENST00000368440 A0A087WWV3 80 aa16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 SMIM35A0A1B0GVV1 85 aa16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 PP2D1A8MPX8 630 aa16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 RSPH10B2B2RC85 870 aa16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 LAD1O00515 517 aa16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 RSPH10BP0C881 870 aa16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 SPATA31C1P0DKV0 1188 aa16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 PRPHP41219 470 aa16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 NPEPPSP55786 919 aa16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 MGAT3Q09327 533 aa16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 TMEM62Q0P6H9 643 aa16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 SF3A1Q15459 793 aaKnown RBP16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 TMEM266Q2M3C6 531 aa16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 RPAINQ86UA6 219 aa16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 ZSWIM4Q9H7M6 989 aa16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 CEP131Q9UPN4 1083 aa16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 CLIC4Q9Y696 253 aa16.89■□□□□ 0.29
SMPDL3A-201ENST00000368440 CHRNA1P02708 482 aa16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 CLCN3P51790 818 aa16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 TCTN1Q2MV58 587 aa16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 KIAA0319LQ8IZA0 1049 aa16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 LRRC71Q8N4P6 559 aa16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 LINC01465Q8N7H1 131 aa16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 IGSF22Q8N9C0 903 aa16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 NEK9Q8TD19 979 aa16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 DKC1O60832 514 aaKnown RBP eCLIP16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 CAND2O75155 1236 aa16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 YWHABP31946 246 aaKnown RBP16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 RFC2P35250 354 aa16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 FAM26DQ5JW98 314 aa16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 DTHD1Q6ZMT9 781 aa16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 CATSPER3Q86XQ3 398 aa16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 ZSCAN16Q9H4T2 348 aaPredicted RBP16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 LRWD1Q9UFC0 647 aa16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 CDY2AQ9Y6F7 541 aa16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 LAMA2P24043 3122 aaKnown RBP16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 PTPRSQ13332 1948 aa16.88■□□□□ 0.29
SMPDL3A-201ENST00000368440 ZSCAN22P10073 491 aaPredicted RBP16.87■□□□□ 0.29
SMPDL3A-201ENST00000368440 CDC25AP30304 524 aa16.87■□□□□ 0.29
SMPDL3A-201ENST00000368440 MRPS6P82932 125 aaKnown RBP16.87■□□□□ 0.29
SMPDL3A-201ENST00000368440 TBC1D8BQ0IIM8 1120 aa16.87■□□□□ 0.29
SMPDL3A-201ENST00000368440 ECM1Q16610 540 aa16.87■□□□□ 0.29
SMPDL3A-201ENST00000368440 HABP4Q5JVS0 413 aaKnown RBP16.87■□□□□ 0.29
SMPDL3A-201ENST00000368440 PSRC1Q6PGN9 363 aaPredicted RBP16.87■□□□□ 0.29
SMPDL3A-201ENST00000368440 OTOP2Q7RTS6 562 aa16.87■□□□□ 0.29
SMPDL3A-201ENST00000368440 RPUSD2Q8IZ73 545 aaKnown RBP16.87■□□□□ 0.29
SMPDL3A-201ENST00000368440 METTL13Q8N6R0 699 aa16.87■□□□□ 0.29
SMPDL3A-201ENST00000368440 PPP1R16BQ96T49 567 aa16.87■□□□□ 0.29
SMPDL3A-201ENST00000368440 CYP26B1Q9NR63 512 aa16.87■□□□□ 0.29
SMPDL3A-201ENST00000368440 A0A1W2PPC1 479 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 VWA3AA6NCI4 1184 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 LYPLA2O95372 231 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 CXCL10P02778 98 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 CEBPZQ03701 1054 aaKnown RBP16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 GRIN1Q05586 938 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 DRP2Q13474 957 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 PDIA5Q14554 519 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 PTPAQ15257 358 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 EFCAB12Q6NXP0 572 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 POTEGQ6S5H5 508 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 RSPH3Q86UC2 560 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 PIGOQ8TEQ8 1089 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 USP28Q96RU2 1077 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 POLR3CQ9BUI4 534 aaPredicted RBP16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 TUFT1Q9NNX1 390 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 BMP2KQ9NSY1 1161 aaPredicted RBP16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 CXXC1Q9P0U4 656 aaPredicted RBP16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 LAMA3Q16787 3333 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 MAGEB2O15479 319 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 F13A1P00488 732 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 FGBP02675 491 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 VTNP04004 478 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 RPA1P27694 616 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 MKRN4PQ13434 485 aaPredicted RBP16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 ERMNQ8TAM6 284 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 CEP170P1Q96L14 293 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 RNPC3Q96LT9 517 aaKnown RBP16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 SUGCTQ9HAC7 445 aa16.86■□□□□ 0.29
SMPDL3A-201ENST00000368440 TRIOBPQ9H2D6 2365 aa16.85■□□□□ 0.29
SMPDL3A-201ENST00000368440 IGKV6-21A0A0C4DH24 114 aa16.85■□□□□ 0.29
SMPDL3A-201ENST00000368440 MAFO75444 373 aaPredicted RBP16.85■□□□□ 0.29
SMPDL3A-201ENST00000368440 PFKMP08237 780 aa16.85■□□□□ 0.29
SMPDL3A-201ENST00000368440 CCT6AP40227 531 aaKnown RBP16.85■□□□□ 0.29
SMPDL3A-201ENST00000368440 FOXD4L6Q3SYB3 417 aaPredicted RBP16.85■□□□□ 0.29
SMPDL3A-201ENST00000368440 XKR9Q5GH70 373 aa16.85■□□□□ 0.29
SMPDL3A-201ENST00000368440 ARL6IP4Q66PJ3 421 aaKnown RBP16.85■□□□□ 0.29
SMPDL3A-201ENST00000368440 FOXD4L3Q6VB84 417 aaPredicted RBP16.85■□□□□ 0.29
SMPDL3A-201ENST00000368440 SNX29Q8TEQ0 813 aa16.85■□□□□ 0.29
SMPDL3A-201ENST00000368440 MMTAG2Q9BU76 263 aaKnown RBP16.85■□□□□ 0.29
SMPDL3A-201ENST00000368440 CDHR5Q9HBB8 845 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms