RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 RINT1Q6NUQ1 792 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 KIAA1324Q6UXG2 1013 aaKnown RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 PHLDB2Q86SQ0 1253 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 TEX12Q9BXU0 123 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 WDR41Q9HAD4 459 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 SPATA6Q9NWH7 488 aaPredicted RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 PEG3Q9GZU2 1588 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 CTAGE5O15320 804 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 CTSHP09668 335 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 OR52Z1P0C646 297 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 MX1P20591 662 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 LTKP29376 864 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 ATICP31939 592 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 ADCY1Q08828 1119 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 NFIXQ14938 502 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 KARSQ15046 597 aaKnown RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 CWC27Q6UX04 472 aaKnown RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 GSTA5Q7RTV2 222 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 TMCO5AQ8N6Q1 288 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 PPP1R16AQ96I34 528 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 MAGEB10Q96LZ2 347 aaPredicted RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 CEP63Q96MT8 703 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 TUFT1Q9NNX1 390 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 POLE4Q9NR33 117 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 STAP1Q9ULZ2 295 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 HBS1LQ9Y450 684 aaKnown RBP4.43□□□□□ -1.7
USH2A-202ENST00000366942 KIF24Q5T7B8 1368 aa4.43□□□□□ -1.7
USH2A-202ENST00000366942 A0A0B4J269 797 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 GOLGA8MH3BSY2 632 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 NOS2P35228 1153 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 HALP42357 657 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 MC1RQ01726 317 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 HEATR6Q6AI08 1181 aaKnown RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 MYCT1Q8N699 235 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 ZNF784Q8NCA9 323 aaPredicted RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 GIMAP7Q8NHV1 300 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 SETD7Q8WTS6 366 aaKnown RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 PIGBQ92521 554 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 TDRD3Q9H7E2 651 aaKnown RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 ZNF302Q9NR11 478 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 GIMAP4Q9NUV9 329 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 SRP68Q9UHB9 627 aaKnown RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 DSEQ9UL01 958 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 BAG5Q9UL15 447 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 ZBTB1Q9Y2K1 713 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 ARAP3Q8WWN8 1544 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 CACNA1GO43497 2377 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 ZNF263O14978 683 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 N4BP3O15049 544 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 CD4P01730 458 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 SCP2P22307 547 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 STAT1P42224 750 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 TUFMP49411 452 aaKnown RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 AP3B2Q13367 1082 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 ZC2HC1CQ53FD0 456 aaPredicted RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 HLA-DQA1Q5Y7H0 255 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 CYP26C1Q6V0L0 522 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 LEKR1Q6ZMV7 388 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 RAB44Q7Z6P3 723 aaPredicted RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 MCEMP1Q8IX19 187 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 USP38Q8NB14 1042 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 TSTD1Q8NFU3 115 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 MAIP1Q8WWC4 291 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 FUBP3Q96I24 572 aaKnown RBP eCLIP4.42□□□□□ -1.7
USH2A-202ENST00000366942 RMDN3Q96TC7 470 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 LNPKQ9C0E8 428 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 PCMTD2Q9NV79 361 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 DDX25Q9UHL0 483 aaKnown RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 TTLL8A6PVC2 850 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 TBKBP1A7MCY6 615 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 STAM2O75886 525 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 SYF2O95926 243 aaKnown RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 HARS2P49590 506 aaKnown RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 GFPT1Q06210 699 aaPredicted RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 CLUL1Q15846 466 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 ARHGEF25Q86VW2 580 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 ERICH1Q86X53 443 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 CCDC50Q8IVM0 306 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 NEK9Q8TD19 979 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 NKD2Q969F2 451 aaPredicted RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 OTUB1Q96FW1 271 aaPredicted RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 REXO5Q96IC2 774 aaKnown RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 ZNF496Q96IT1 587 aaPredicted RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 EYA1Q99502 592 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 CGRRF1Q99675 332 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 CCDC3Q9BQI4 270 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 HAUS8Q9BT25 410 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 HIPK3Q9H422 1215 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 KIAA1586Q9HCI6 787 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 SAGE1Q9NXZ1 904 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 MAGED2Q9UNF1 606 aaPredicted RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 PTPRZ1P23471 2315 aaPredicted RBP4.42□□□□□ -1.7
USH2A-202ENST00000366942 COL15A1P39059 1388 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 HEG1Q9ULI3 1381 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 RHOBTB3O94955 611 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 BMP10O95393 424 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 MBD3O95983 291 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 CKBP12277 381 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 TPH1P17752 444 aa4.42□□□□□ -1.7
USH2A-202ENST00000366942 TNNI3P19429 210 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms