RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 RNF214Q8ND24 703 aa22.11■■□□□ 1.13
CLN3-205ENST00000359984 CCDC43Q96MW1 224 aaKnown RBP22.11■■□□□ 1.13
CLN3-205ENST00000359984 SEPT9Q9UHD8 586 aaPredicted RBP22.11■■□□□ 1.13
CLN3-205ENST00000359984 FRMD3A2A2Y4 597 aa22.1■■□□□ 1.13
CLN3-205ENST00000359984 AKR1A1P14550 325 aa22.1■■□□□ 1.13
CLN3-205ENST00000359984 ZNF165P49910 485 aa22.1■■□□□ 1.13
CLN3-205ENST00000359984 TLK2Q86UE8 772 aa22.1■■□□□ 1.13
CLN3-205ENST00000359984 CCDC65Q8IXS2 484 aa22.1■■□□□ 1.13
CLN3-205ENST00000359984 RAET1EQ8TD07 263 aa22.1■■□□□ 1.13
CLN3-205ENST00000359984 HPS3Q969F9 1004 aa22.1■■□□□ 1.13
CLN3-205ENST00000359984 CEP170P1Q96L14 293 aa22.1■■□□□ 1.13
CLN3-205ENST00000359984 SMARCAD1Q9H4L7 1026 aa22.1■■□□□ 1.13
CLN3-205ENST00000359984 POLD4Q9HCU8 107 aa22.1■■□□□ 1.13
CLN3-205ENST00000359984 GDAQ9Y2T3 454 aa22.1■■□□□ 1.13
CLN3-205ENST00000359984 RSPH10B2B2RC85 870 aa22.09■■□□□ 1.13
CLN3-205ENST00000359984 PPFIA4O75335 1185 aa22.09■■□□□ 1.13
CLN3-205ENST00000359984 CAVIN2O95810 425 aa22.09■■□□□ 1.13
CLN3-205ENST00000359984 LGALS2P05162 132 aa22.09■■□□□ 1.13
CLN3-205ENST00000359984 RSPH10BP0C881 870 aa22.09■■□□□ 1.13
CLN3-205ENST00000359984 HOXD8P13378 290 aaPredicted RBP22.09■■□□□ 1.13
CLN3-205ENST00000359984 GUCY2CP25092 1073 aa22.09■■□□□ 1.13
CLN3-205ENST00000359984 COASYQ13057 564 aa22.09■■□□□ 1.13
CLN3-205ENST00000359984 NIFKQ9BYG3 293 aaKnown RBP22.09■■□□□ 1.13
CLN3-205ENST00000359984 CYP26B1Q9NR63 512 aa22.09■■□□□ 1.13
CLN3-205ENST00000359984 NRBP2Q9NSY0 501 aa22.09■■□□□ 1.13
CLN3-205ENST00000359984 Q9Y3F1 56 aa22.09■■□□□ 1.13
CLN3-205ENST00000359984 MYH9P35579 1960 aaKnown RBP22.09■■□□□ 1.13
CLN3-205ENST00000359984 LOXHD1Q8IVV2 1947 aa22.09■■□□□ 1.13
CLN3-205ENST00000359984 USO1O60763 962 aaKnown RBP22.09■■□□□ 1.13
CLN3-205ENST00000359984 MMP3P08254 477 aa22.09■■□□□ 1.13
CLN3-205ENST00000359984 MARK3P27448 753 aa22.09■■□□□ 1.13
CLN3-205ENST00000359984 MRE11P49959 708 aa22.09■■□□□ 1.13
CLN3-205ENST00000359984 FAM200AQ8TCP9 573 aa22.09■■□□□ 1.13
CLN3-205ENST00000359984 CBX8Q9HC52 389 aa22.09■■□□□ 1.13
CLN3-205ENST00000359984 A6NJR5 290 aa22.08■■□□□ 1.13
CLN3-205ENST00000359984 CD44P16070 742 aaKnown RBP22.08■■□□□ 1.13
CLN3-205ENST00000359984 SLC26A2P50443 739 aa22.08■■□□□ 1.13
CLN3-205ENST00000359984 STK4Q13043 487 aa22.08■■□□□ 1.13
CLN3-205ENST00000359984 PXYLP1Q8TE99 480 aa22.08■■□□□ 1.13
CLN3-205ENST00000359984 NAT10Q9H0A0 1025 aaKnown RBP22.08■■□□□ 1.13
CLN3-205ENST00000359984 ZHX3Q9H4I2 956 aa22.08■■□□□ 1.13
CLN3-205ENST00000359984 CEP350Q5VT06 3117 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 PPP1R3GB7ZBB8 358 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 HMGCRP04035 888 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 PRKAR2AP13861 404 aaKnown RBP22.07■■□□□ 1.12
CLN3-205ENST00000359984 PRMT2P55345 433 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 IRX5P78411 483 aaPredicted RBP22.07■■□□□ 1.12
CLN3-205ENST00000359984 PLCB4Q15147 1175 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 MTERF2Q49AM1 385 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 HERC4Q5GLZ8 1057 aaPredicted RBP22.07■■□□□ 1.12
CLN3-205ENST00000359984 ATP8B4Q8TF62 1192 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 FAM167AQ96KS9 214 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 AP5M1Q9H0R1 490 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 HIP1RO75146 1068 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 DUSP11O75319 330 aaKnown RBP22.07■■□□□ 1.12
CLN3-205ENST00000359984 TBCAO75347 108 aaKnown RBP22.07■■□□□ 1.12
CLN3-205ENST00000359984 CNGA1P29973 690 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 MAPK7Q13164 816 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 PSMD2Q13200 908 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 DGKDQ16760 1214 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 MAEAQ7L5Y9 396 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 BBXQ8WY36 941 aaPredicted RBP22.07■■□□□ 1.12
CLN3-205ENST00000359984 CEP89Q96ST8 783 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 C16orf70Q9BSU1 422 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 GRPEL1Q9HAV7 217 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 SLC39A2Q9NP94 309 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 ERAP1Q9NZ08 941 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 DACH1Q9UI36 760 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 ODF2LQ9ULJ1 636 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 TRIM17Q9Y577 477 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 COL4A3BPQ9Y5P4 624 aa22.07■■□□□ 1.12
CLN3-205ENST00000359984 SFI1A8K8P3 1242 aa22.06■■□□□ 1.12
CLN3-205ENST00000359984 SEPT4O43236 478 aa22.06■■□□□ 1.12
CLN3-205ENST00000359984 ZNF286BP0CG31 522 aa22.06■■□□□ 1.12
CLN3-205ENST00000359984 IQCB1Q15051 598 aa22.06■■□□□ 1.12
CLN3-205ENST00000359984 TARBP2Q15633 366 aaKnown RBP22.06■■□□□ 1.12
CLN3-205ENST00000359984 DAW1Q8N136 415 aa22.06■■□□□ 1.12
CLN3-205ENST00000359984 KIAA0895Q8NCT3 520 aa22.06■■□□□ 1.12
CLN3-205ENST00000359984 BPIFA3Q9BQP9 254 aa22.06■■□□□ 1.12
CLN3-205ENST00000359984 GTPBP4Q9BZE4 634 aaKnown RBP22.06■■□□□ 1.12
CLN3-205ENST00000359984 PDLIM7Q9NR12 457 aa22.06■■□□□ 1.12
CLN3-205ENST00000359984 MAPK8IP1Q9UQF2 711 aa22.06■■□□□ 1.12
CLN3-205ENST00000359984 PCDHA2Q9Y5H9 948 aa22.06■■□□□ 1.12
CLN3-205ENST00000359984 FAM13AO94988 1023 aa22.05■■□□□ 1.12
CLN3-205ENST00000359984 CCND3P30281 292 aaPredicted RBP22.05■■□□□ 1.12
CLN3-205ENST00000359984 PRCPP42785 496 aa22.05■■□□□ 1.12
CLN3-205ENST00000359984 ZNF131P52739 623 aa22.05■■□□□ 1.12
CLN3-205ENST00000359984 FAM26FQ5R3K3 315 aa22.05■■□□□ 1.12
CLN3-205ENST00000359984 MAP3K21Q5TCX8 1036 aa22.05■■□□□ 1.12
CLN3-205ENST00000359984 LUZP1Q86V48 1076 aa22.05■■□□□ 1.12
CLN3-205ENST00000359984 SFR1Q86XK3 245 aa22.05■■□□□ 1.12
CLN3-205ENST00000359984 RNPEPQ9H4A4 650 aa22.05■■□□□ 1.12
CLN3-205ENST00000359984 TBC1D7Q9P0N9 293 aa22.05■■□□□ 1.12
CLN3-205ENST00000359984 DGAT1O75907 488 aa22.05■■□□□ 1.12
CLN3-205ENST00000359984 ADSSL1Q8N142 457 aa22.05■■□□□ 1.12
CLN3-205ENST00000359984 TIPINQ9BVW5 301 aa22.05■■□□□ 1.12
CLN3-205ENST00000359984 GAP43P17677 238 aa22.04■■□□□ 1.12
CLN3-205ENST00000359984 DHX40Q8IX18 779 aaKnown RBP22.04■■□□□ 1.12
CLN3-205ENST00000359984 SLAIN1Q8ND83 568 aa22.04■■□□□ 1.12
CLN3-205ENST00000359984 GLIS3Q8NEA6 775 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms