RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 KDM5BQ9UGL1 1544 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 GARSP41250 739 aaKnown RBP6.51□□□□□ -1.37
VPS13B-203ENST00000358544 GJA8P48165 433 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 HSPA13P48723 471 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 ARFIP2P53365 341 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 AKAP4Q5JQC9 854 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 PODNQ7Z5L7 613 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 DDI1Q8WTU0 396 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 NPATQ14207 1427 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 KDM5CP41229 1560 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 MIF4GDA9UHW6 222 aaKnown RBP6.51□□□□□ -1.37
VPS13B-203ENST00000358544 GSTA4O15217 222 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 ZNF185O15231 689 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 PECAM1P16284 738 aaPredicted RBP6.51□□□□□ -1.37
VPS13B-203ENST00000358544 MRPL12P52815 198 aaKnown RBP6.51□□□□□ -1.37
VPS13B-203ENST00000358544 BASP1P80723 227 aaKnown RBP6.51□□□□□ -1.37
VPS13B-203ENST00000358544 SLC39A6Q13433 755 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 MCF2L2Q86YR7 1114 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 DPF2Q92785 391 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 MCM9Q9NXL9 1143 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 ATXN10Q9UBB4 475 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 APOBEC2Q9Y235 224 aaKnown RBP6.51□□□□□ -1.37
VPS13B-203ENST00000358544 DOCK9Q9BZ29 2069 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 KRT37O76014 449 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 MYBL1P10243 752 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 MYCT1Q8N699 235 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 CASKIN2Q8WXE0 1202 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 MTBPQ96DY7 904 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 CARD10Q9BWT7 1032 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 FAM96AQ9H5X1 160 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 PHF8Q9UPP1 1060 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 PDE6AP16499 860 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 GABPB2Q8TAK5 448 aaPredicted RBP6.51□□□□□ -1.37
VPS13B-203ENST00000358544 TMBIM4Q9HC24 238 aa6.51□□□□□ -1.37
VPS13B-203ENST00000358544 YWHAEP62258 255 aaKnown RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 PPP2R5CQ13362 524 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 ALKBH5Q6P6C2 394 aaKnown RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 CAPN11Q9UMQ6 739 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 ITIH6Q6UXX5 1313 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 POLD1P28340 1107 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 GSTT1P30711 240 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 TMED8Q6PL24 325 aaPredicted RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 DPH6Q7L8W6 267 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 AENQ8WTP8 325 aaKnown RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 ALDH8A1Q9H2A2 487 aaPredicted RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 KCND1Q9NSA2 647 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 STRIP2Q9ULQ0 834 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 HSD17B3P37058 310 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 WDR93Q6P2C0 686 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 PRPF31Q8WWY3 499 aaKnown RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 FNBP1Q96RU3 617 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 KRT1P04264 644 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 DCTN2Q13561 401 aaKnown RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 FLOT2Q14254 428 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 WWP1Q9H0M0 922 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 DMAP1Q9NPF5 467 aaPredicted RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 TLR7Q9NYK1 1049 aaKnown RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 ATXN2Q99700 1313 aaKnown RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 ZNF532Q9HCE3 1301 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 NOP56O00567 594 aaKnown RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 ERFP50548 548 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 STX1BP61266 288 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 KLHL38Q2WGJ6 581 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 ATP11BQ9Y2G3 1177 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 ACTN1P12814 892 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 TRHP20396 242 aaPredicted RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 RPS6KA3P51812 740 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 WASHC2DQ5SRD0 308 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 AIFM3Q96NN9 605 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 ASCC2Q9H1I8 757 aaPredicted RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 ALG13Q9NP73 1137 aaKnown RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 PRDM11Q9NQV5 511 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 ADAMTS1Q9UHI8 967 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 ROS1P08922 2347 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 DNMBPQ6XZF7 1577 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 TMEM120BA0PK00 339 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 SERPINB10P48595 397 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 BPIFB4P59827 614 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 LRRC63Q05C16 580 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 NR5A1Q13285 461 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 COL23A1Q86Y22 540 aaPredicted RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 MAGEC3Q8TD91 643 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 BAG5Q9UL15 447 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 ZNF652Q9Y2D9 606 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 NCF2P19878 526 aaPredicted RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 EIF2B2P49770 351 aaKnown RBP6.5□□□□□ -1.37
VPS13B-203ENST00000358544 SLC12A2P55011 1212 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 TRIM60Q495X7 471 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 OR2W6PQ8NHA6 318 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 PARD3BQ8TEW8 1205 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 RAPGEF5Q92565 580 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 SNF8Q96H20 258 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 MPP4Q96JB8 637 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 C1orf112Q9NSG2 853 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 UBAP1Q9NZ09 502 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 SYNGAP1Q96PV0 1343 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 ABCC1P33527 1531 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 LAD1O00515 517 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 TMCO5AQ8N6Q1 288 aa6.5□□□□□ -1.37
VPS13B-203ENST00000358544 BTBD6Q96KE9 485 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms