RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 PDLIM7Q9NR12 457 aa4.51□□□□□ -1.69
LIG4-201ENST00000356922 DACT1Q9NYF0 836 aa4.51□□□□□ -1.69
LIG4-201ENST00000356922 Q9Y3F1 56 aa4.51□□□□□ -1.69
LIG4-201ENST00000356922 MYH9P35579 1960 aaKnown RBP4.51□□□□□ -1.69
LIG4-201ENST00000356922 PDE4DIPQ5VU43 2346 aa4.51□□□□□ -1.69
LIG4-201ENST00000356922 MYMKA6NI61 221 aa4.51□□□□□ -1.69
LIG4-201ENST00000356922 DDX11L8A8MPP1 907 aa4.51□□□□□ -1.69
LIG4-201ENST00000356922 RARRES1P49788 294 aa4.51□□□□□ -1.69
LIG4-201ENST00000356922 SMAP1Q8IYB5 467 aaPredicted RBP4.51□□□□□ -1.69
LIG4-201ENST00000356922 LMBR1Q8WVP7 490 aa4.51□□□□□ -1.69
LIG4-201ENST00000356922 ABHD8Q96I13 439 aa4.51□□□□□ -1.69
LIG4-201ENST00000356922 PPP1R16BQ96T49 567 aa4.51□□□□□ -1.69
LIG4-201ENST00000356922 MPHOSPH6Q99547 160 aaKnown RBP4.51□□□□□ -1.69
LIG4-201ENST00000356922 POLR3CQ9BUI4 534 aaPredicted RBP4.51□□□□□ -1.69
LIG4-201ENST00000356922 AP5M1Q9H0R1 490 aa4.51□□□□□ -1.69
LIG4-201ENST00000356922 CEP131Q9UPN4 1083 aa4.51□□□□□ -1.69
LIG4-201ENST00000356922 A0A1W2PQ27 194 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 A0A1W2PQ64 194 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 A0A1W2PQD8 194 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 TTLL13PA6NNM8 815 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 NKRFO15226 690 aaKnown RBP eCLIP4.5□□□□□ -1.69
LIG4-201ENST00000356922 PSAPP07602 524 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 IQCF3P0C7M6 154 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 SMIM10L2AP0DMW4 78 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 SMIM10L2BP0DMW5 78 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 BMP6P22004 513 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 AFMP43652 599 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 PSMC5P62195 406 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 TMEM62Q0P6H9 643 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 CUL4BQ13620 913 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 MTERF2Q49AM1 385 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 KRT79Q5XKE5 535 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 ISM2Q6H9L7 571 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 MIS18BP1Q6P0N0 1132 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 PLPPR4Q7Z2D5 763 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 SH3RF1Q7Z6J0 888 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 C4orf19Q8IY42 314 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 BSNDQ8WZ55 320 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 TMEM143Q96AN5 459 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 NAP1L4Q99733 375 aaKnown RBP4.5□□□□□ -1.69
LIG4-201ENST00000356922 TMEM63CQ9P1W3 806 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 UMODL1Q5DID0 1318 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 EMSYQ7Z589 1322 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 OATP04181 439 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 CYP2C9P11712 490 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 CST5P28325 142 aaPredicted RBP4.5□□□□□ -1.69
LIG4-201ENST00000356922 SFNP31947 248 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 PSEN2P49810 448 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 CDK7P50613 346 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 MAPK7Q13164 816 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 PNOCQ13519 176 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 ITGA7Q13683 1181 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 MFSD10Q14728 455 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 GPNMBQ14956 572 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 LRRC26Q2I0M4 334 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 RINT1Q6NUQ1 792 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 C1orf186Q6ZWK4 172 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 DYMQ7RTS9 669 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 GIMAP8Q8ND71 665 aaPredicted RBP4.5□□□□□ -1.69
LIG4-201ENST00000356922 DHX38Q92620 1227 aaKnown RBP4.5□□□□□ -1.69
LIG4-201ENST00000356922 DNAJC19Q96DA6 116 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 VWCEQ96DN2 955 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 ZSWIM4Q9H7M6 989 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 KBTBD4Q9NVX7 518 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 SEPT9Q9UHD8 586 aaPredicted RBP4.5□□□□□ -1.69
LIG4-201ENST00000356922 TET1Q8NFU7 2136 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 B4GALT4O60513 344 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 BMP15O95972 392 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 EDN1P05305 212 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 PLA2G4BP0C869 781 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 CYP11B2P19099 503 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 KLRC1P26715 233 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 HOXC8P31273 242 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 CPT1AP50416 773 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 CLCN3P51790 818 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 JAK3P52333 1124 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 UBE2HP62256 183 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 KCNA1Q09470 495 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 TMEM266Q2M3C6 531 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 RRAGBQ5VZM2 374 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 CKAP2LQ8IYA6 745 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 ATP8B4Q8TF62 1192 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 MRPS27Q92552 414 aaKnown RBP4.5□□□□□ -1.69
LIG4-201ENST00000356922 RAD54LQ92698 747 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 PAGE5Q96GU1 130 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 AK8Q96MA6 479 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 KIFC3Q9BVG8 833 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 NIFKQ9BYG3 293 aaKnown RBP4.5□□□□□ -1.69
LIG4-201ENST00000356922 SMARCAD1Q9H4L7 1026 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 CYP26B1Q9NR63 512 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 ERAP1Q9NZ08 941 aa4.5□□□□□ -1.69
LIG4-201ENST00000356922 CCDC85CA6NKD9 419 aa4.49□□□□□ -1.69
LIG4-201ENST00000356922 DNM1LO00429 736 aa4.49□□□□□ -1.69
LIG4-201ENST00000356922 LYPLA2O95372 231 aa4.49□□□□□ -1.69
LIG4-201ENST00000356922 C22orf31O95567 290 aa4.49□□□□□ -1.69
LIG4-201ENST00000356922 SSBP05455 408 aaKnown RBP eCLIP4.49□□□□□ -1.69
LIG4-201ENST00000356922 SYKP43405 635 aa4.49□□□□□ -1.69
LIG4-201ENST00000356922 CASP5P51878 434 aa4.49□□□□□ -1.69
LIG4-201ENST00000356922 GIT2Q14161 759 aa4.49□□□□□ -1.69
LIG4-201ENST00000356922 GRIK4Q16099 956 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms