RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 TPM3P06753 285 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 TOP1P11387 765 aaKnown RBP9.28□□□□□ -0.92
CD44-205ENST00000352818 MARCKSP29966 332 aaPredicted RBP9.28□□□□□ -0.92
CD44-205ENST00000352818 NR5A1Q13285 461 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 IQCB1Q15051 598 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 ANGPT1Q15389 498 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 KIAA0319Q5VV43 1072 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 SARM1Q6SZW1 724 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.28□□□□□ -0.92
CD44-205ENST00000352818 CEP57L1Q8IYX8 460 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 CCDC82Q8N4S0 544 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 ZNF713Q8N859 430 aaPredicted RBP9.28□□□□□ -0.92
CD44-205ENST00000352818 FAM133AQ8N9E0 248 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 CCDC148Q8NFR7 591 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 OXER1Q8TDS5 423 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 SUSD6Q92537 303 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 SAMD11Q96NU1 681 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 TMEM47Q9BQJ4 181 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 SDF4Q9BRK5 362 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 AP5M1Q9H0R1 490 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 VCPKMTQ9H867 229 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 CABP5Q9NP86 173 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 TUBE1Q9UJT0 475 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 ZKSCAN5Q9Y2L8 839 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 TMX2Q9Y320 296 aa9.28□□□□□ -0.92
CD44-205ENST00000352818 HELZ2Q9BYK8 2649 aaKnown RBP9.28□□□□□ -0.92
CD44-205ENST00000352818 LOC400499M0QZD8 3231 aa9.27□□□□□ -0.92
CD44-205ENST00000352818 WDFY3Q8IZQ1 3526 aa9.27□□□□□ -0.93
CD44-205ENST00000352818 M0R2N6 131 aa9.27□□□□□ -0.93
CD44-205ENST00000352818 CDC25BP30305 580 aa9.27□□□□□ -0.93
CD44-205ENST00000352818 NLRP12P59046 1061 aa9.27□□□□□ -0.93
CD44-205ENST00000352818 BFSP2Q13515 415 aa9.27□□□□□ -0.93
CD44-205ENST00000352818 ADGRD2Q7Z7M1 963 aa9.27□□□□□ -0.93
CD44-205ENST00000352818 CCDC105Q8IYK2 499 aa9.27□□□□□ -0.93
CD44-205ENST00000352818 KREMEN2Q8NCW0 462 aa9.27□□□□□ -0.93
CD44-205ENST00000352818 CYP2W1Q8TAV3 490 aa9.27□□□□□ -0.93
CD44-205ENST00000352818 NAT10Q9H0A0 1025 aaKnown RBP9.27□□□□□ -0.93
CD44-205ENST00000352818 DNAJC25Q9H1X3 360 aa9.27□□□□□ -0.93
CD44-205ENST00000352818 FAM13BQ9NYF5 915 aa9.27□□□□□ -0.93
CD44-205ENST00000352818 MYH4Q9Y623 1939 aa9.27□□□□□ -0.93
CD44-205ENST00000352818 IGF2RP11717 2491 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 ESYT2A0FGR8 921 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 SOBPA7XYQ1 873 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 WDR46O15213 610 aaKnown RBP9.26□□□□□ -0.93
CD44-205ENST00000352818 ZNF500O60304 480 aaPredicted RBP9.26□□□□□ -0.93
CD44-205ENST00000352818 ZEB2O60315 1214 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 CSPG5O95196 566 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 PARP1P09874 1014 aaKnown RBP9.26□□□□□ -0.93
CD44-205ENST00000352818 SNHG28P0DPA3 235 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 SELPP16109 830 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 NPR3P17342 541 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 MSNP26038 577 aaKnown RBP9.26□□□□□ -0.93
CD44-205ENST00000352818 COPB2P35606 906 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 NDUFV1P49821 464 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 CLCN5P51795 746 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 ATP2C1P98194 919 aaPredicted RBP9.26□□□□□ -0.93
CD44-205ENST00000352818 RBL2Q08999 1139 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 ASPRV1Q53RT3 343 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 FAM47CQ5HY64 1035 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 TTC38Q5R3I4 469 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 SNRNP48Q6IEG0 339 aaKnown RBP9.26□□□□□ -0.93
CD44-205ENST00000352818 KRBA2Q6ZNG9 492 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 C11orf57Q6ZUT1 292 aaPredicted RBP9.26□□□□□ -0.93
CD44-205ENST00000352818 LRRC8DQ7L1W4 858 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 LUZP1Q86V48 1076 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 PLA2G4DQ86XP0 818 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 BLIDQ8IZY5 108 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 STAG2Q8N3U4 1231 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 AFAP1L1Q8TED9 768 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 CCDC12Q8WUD4 166 aaPredicted RBP9.26□□□□□ -0.93
CD44-205ENST00000352818 RUBCNQ92622 972 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 CEP95Q96GE4 821 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 CCDC17Q96LX7 622 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 TEX13BQ9BXU2 312 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 BARHL2Q9NY43 387 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 MTMR4Q9NYA4 1195 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 HOOK1Q9UJC3 728 aaKnown RBP9.26□□□□□ -0.93
CD44-205ENST00000352818 KCNH3Q9ULD8 1083 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 BARX2Q9UMQ3 279 aaPredicted RBP9.26□□□□□ -0.93
CD44-205ENST00000352818 PCDHA4Q9UN74 947 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 Q9Y3F1 56 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 PCDHB6Q9Y5E3 794 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 SCN10AQ9Y5Y9 1956 aa9.26□□□□□ -0.93
CD44-205ENST00000352818 GOLGA6L6A8MZA4 724 aa9.25□□□□□ -0.93
CD44-205ENST00000352818 C5orf67F2Z3F1 127 aa9.25□□□□□ -0.93
CD44-205ENST00000352818 IKBKBO14920 756 aa9.25□□□□□ -0.93
CD44-205ENST00000352818 AP5Z1O43299 807 aa9.25□□□□□ -0.93
CD44-205ENST00000352818 PTMAP06454 111 aaKnown RBP9.25□□□□□ -0.93
CD44-205ENST00000352818 DNAJB1P25685 340 aa9.25□□□□□ -0.93
CD44-205ENST00000352818 NLRP5P59047 1200 aa9.25□□□□□ -0.93
CD44-205ENST00000352818 RBM10P98175 930 aaKnown RBP9.25□□□□□ -0.93
CD44-205ENST00000352818 ORC2Q13416 577 aaPredicted RBP9.25□□□□□ -0.93
CD44-205ENST00000352818 ZRSR1Q15695 479 aaKnown RBP9.25□□□□□ -0.93
CD44-205ENST00000352818 SLC35G1Q2M3R5 365 aa9.25□□□□□ -0.93
CD44-205ENST00000352818 EARS2Q5JPH6 523 aaKnown RBP9.25□□□□□ -0.93
CD44-205ENST00000352818 WWC2Q6AWC2 1192 aa9.25□□□□□ -0.93
CD44-205ENST00000352818 KANK3Q6NY19 840 aa9.25□□□□□ -0.93
CD44-205ENST00000352818 NFRKBQ6P4R8 1299 aa9.25□□□□□ -0.93
CD44-205ENST00000352818 DHX40Q8IX18 779 aaKnown RBP9.25□□□□□ -0.93
CD44-205ENST00000352818 FBXO16Q8IX29 292 aaPredicted RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms