RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 KCNA10Q16322 511 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 PTPN21Q16825 1174 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 DPCR1Q3MIW9 517 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 IQSEC1Q6DN90 963 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 CCDC34Q96HJ3 373 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 NACC1Q96RE7 527 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 REEP2Q9BRK0 252 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 NT5C3AQ9H0P0 336 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 PTPN22Q9Y2R2 807 aa10.24□□□□□ -0.77
USP4-202ENST00000351842 LRRIQ4A6NIV6 560 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 PES1O00541 588 aaKnown RBP10.23□□□□□ -0.77
USP4-202ENST00000351842 STAM2O75886 525 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 VTNP04004 478 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 XRCC6P12956 609 aaKnown RBP eCLIP10.23□□□□□ -0.77
USP4-202ENST00000351842 CTCFP49711 727 aaPredicted RBP10.23□□□□□ -0.77
USP4-202ENST00000351842 PEX3P56589 373 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 FAM160B1Q5W0V3 765 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 SAMD3Q8N6K7 520 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 SENP7Q9BQF6 1050 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 FGFBP2Q9BYJ0 223 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 CCSER1Q9C0I3 900 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 EXOC1Q9NV70 894 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 AKT3Q9Y243 479 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 KDM3AQ9Y4C1 1321 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 EVPLQ92817 2033 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 XRCC5P13010 732 aaKnown RBP10.23□□□□□ -0.77
USP4-202ENST00000351842 SFNP31947 248 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 PLCB4Q15147 1175 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 E2F4Q16254 413 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 ANO6Q4KMQ2 910 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 RHPN2Q8IUC4 686 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 SENP6Q9GZR1 1112 aaPredicted RBP10.23□□□□□ -0.77
USP4-202ENST00000351842 HOOK1Q9UJC3 728 aaKnown RBP10.23□□□□□ -0.77
USP4-202ENST00000351842 DIS3Q9Y2L1 958 aaKnown RBP10.23□□□□□ -0.77
USP4-202ENST00000351842 A0A0G2JMZ2 1700 aa10.23□□□□□ -0.77
USP4-202ENST00000351842 SZT2Q5T011 3432 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 OATP04181 439 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 CCL5P13501 91 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 NMT1P30419 496 aaKnown RBP10.22□□□□□ -0.77
USP4-202ENST00000351842 RARRES1P49788 294 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 PPFIA1Q13136 1202 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 ZC2HC1CQ53FD0 456 aaPredicted RBP10.22□□□□□ -0.77
USP4-202ENST00000351842 ODR4Q5SWX8 454 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 NIPA1Q7RTP0 329 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 SMAP1Q8IYB5 467 aaPredicted RBP10.22□□□□□ -0.77
USP4-202ENST00000351842 C7orf31Q8N865 590 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 SLC7A3Q8WY07 619 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 MRPL44Q9H9J2 332 aaKnown RBP10.22□□□□□ -0.77
USP4-202ENST00000351842 KIAA1468Q9P260 1216 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 MYH15Q9Y2K3 1946 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 HIP1RO75146 1068 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 GCNT3O95395 438 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 FGFR4P22455 802 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 ICAM3P32942 547 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 SFR1Q86XK3 245 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 GIMAP8Q8ND71 665 aaPredicted RBP10.22□□□□□ -0.77
USP4-202ENST00000351842 TRIM9Q9C026 710 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.22□□□□□ -0.77
USP4-202ENST00000351842 PANK4Q9NVE7 773 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 SAGE1Q9NXZ1 904 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 ERAP1Q9NZ08 941 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 DDX20Q9UHI6 824 aaKnown RBP10.22□□□□□ -0.77
USP4-202ENST00000351842 PQBP1O60828 265 aaKnown RBP10.22□□□□□ -0.77
USP4-202ENST00000351842 RPN1P04843 607 aaKnown RBP10.22□□□□□ -0.77
USP4-202ENST00000351842 CYP11B2P19099 503 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 MATR3P43243 847 aaKnown RBP eCLIP10.22□□□□□ -0.77
USP4-202ENST00000351842 TYRO3Q06418 890 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 KCNA1Q09470 495 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 KMT5BQ4FZB7 885 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 RINT1Q6NUQ1 792 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 KCNV1Q6PIU1 500 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 CTU1Q7Z7A3 348 aaKnown RBP10.22□□□□□ -0.77
USP4-202ENST00000351842 ZNF467Q7Z7K2 595 aaPredicted RBP10.22□□□□□ -0.77
USP4-202ENST00000351842 GAS2L3Q86XJ1 694 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 SLAIN1Q8ND83 568 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 HDAC6Q9UBN7 1215 aa10.22□□□□□ -0.77
USP4-202ENST00000351842 ZNF215Q9UL58 517 aaPredicted RBP10.22□□□□□ -0.77
USP4-202ENST00000351842 TRIP12Q14669 1992 aaPredicted RBP10.21□□□□□ -0.77
USP4-202ENST00000351842 PRUNE2Q8WUY3 3088 aa10.21□□□□□ -0.77
USP4-202ENST00000351842 SLC16A4O15374 487 aa10.21□□□□□ -0.77
USP4-202ENST00000351842 PRPF6O94906 941 aaKnown RBP10.21□□□□□ -0.77
USP4-202ENST00000351842 KLRC1P26715 233 aa10.21□□□□□ -0.77
USP4-202ENST00000351842 MRE11P49959 708 aa10.21□□□□□ -0.77
USP4-202ENST00000351842 ARSHQ5FYA8 562 aa10.21□□□□□ -0.77
USP4-202ENST00000351842 C11orf57Q6ZUT1 292 aaPredicted RBP10.21□□□□□ -0.77
USP4-202ENST00000351842 OTUD6AQ7L8S5 288 aa10.21□□□□□ -0.77
USP4-202ENST00000351842 LUZP1Q86V48 1076 aa10.21□□□□□ -0.77
USP4-202ENST00000351842 RDH13Q8NBN7 331 aa10.21□□□□□ -0.77
USP4-202ENST00000351842 PPTC7Q8NI37 304 aa10.21□□□□□ -0.77
USP4-202ENST00000351842 DIS3LQ8TF46 1054 aaKnown RBP10.21□□□□□ -0.77
USP4-202ENST00000351842 SMARCAD1Q9H4L7 1026 aa10.21□□□□□ -0.77
USP4-202ENST00000351842 CYP26B1Q9NR63 512 aa10.21□□□□□ -0.77
USP4-202ENST00000351842 GNEQ9Y223 722 aaKnown RBP10.21□□□□□ -0.77
USP4-202ENST00000351842 TRIM49BA6NDI0 452 aa10.21□□□□□ -0.78
USP4-202ENST00000351842 GOLGA6L3A6NEY3 463 aa10.21□□□□□ -0.78
USP4-202ENST00000351842 PPFIA4O75335 1185 aa10.21□□□□□ -0.78
USP4-202ENST00000351842 SMC2O95347 1197 aa10.21□□□□□ -0.78
USP4-202ENST00000351842 CPT1AP50416 773 aa10.21□□□□□ -0.78
USP4-202ENST00000351842 AMPD3Q01432 767 aa10.21□□□□□ -0.78
USP4-202ENST00000351842 STK4Q13043 487 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms