RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 KLHL29Q96CT2 875 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 CALML4Q96GE6 196 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 ZMYND12Q9H0C1 365 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 IL17RBQ9NRM6 502 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 SUCLA2Q9P2R7 463 aaPredicted RBP7.38□□□□□ -1.23
VPS39-202ENST00000348544 ASAP1Q9ULH1 1129 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 STK38LQ9Y2H1 464 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 ATAD5Q96QE3 1844 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 RGS16O15492 202 aaPredicted RBP7.38□□□□□ -1.23
VPS39-202ENST00000348544 MSH2P43246 934 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 SLCO1A2P46721 670 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 TUBP50607 506 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 ZNF131P52739 623 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 COPS2P61201 443 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 FKBP3Q00688 224 aaKnown RBP7.38□□□□□ -1.23
VPS39-202ENST00000348544 SLC4A8Q2Y0W8 1093 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 CCDC38Q502W7 563 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 TNFAIP8L3Q5GJ75 292 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 ALKBH5Q6P6C2 394 aaKnown RBP7.38□□□□□ -1.23
VPS39-202ENST00000348544 ADAT2Q7Z6V5 191 aaKnown RBP7.38□□□□□ -1.23
VPS39-202ENST00000348544 DAAM2Q86T65 1068 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 MYOCDQ8IZQ8 938 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 PNMA1Q8ND90 353 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 UHMK1Q8TAS1 419 aaKnown RBP7.38□□□□□ -1.23
VPS39-202ENST00000348544 RBM46Q8TBY0 533 aaKnown RBP7.38□□□□□ -1.23
VPS39-202ENST00000348544 FBXO25Q8TCJ0 367 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 DDX12PQ92771 950 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 GLG1Q92896 1179 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 HES6Q96HZ4 224 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 TSG101Q99816 390 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 CPVLQ9H3G5 476 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 SEMA4AQ9H3S1 761 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 GOPCQ9HD26 462 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 RIC8AQ9NPQ8 531 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 FGFR1OP2Q9NVK5 253 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 ZFATQ9P243 1243 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 NKX1-2Q9UD57 310 aaPredicted RBP7.38□□□□□ -1.23
VPS39-202ENST00000348544 USP15Q9Y4E8 981 aaPredicted RBP7.38□□□□□ -1.23
VPS39-202ENST00000348544 SHANK3Q9BYB0 1731 aa7.38□□□□□ -1.23
VPS39-202ENST00000348544 ZNF142P52746 1687 aaPredicted RBP7.38□□□□□ -1.23
VPS39-202ENST00000348544 LAMB1P07942 1786 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 DPPA5A6NC42 116 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 POTEMA6NI47 508 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 TSPY2A6NKD2 308 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 FESP07332 822 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 MYBL1P10243 752 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 PECAM1P16284 738 aaPredicted RBP7.37□□□□□ -1.23
VPS39-202ENST00000348544 ATP2A2P16615 1042 aaKnown RBP7.37□□□□□ -1.23
VPS39-202ENST00000348544 ATP4AP20648 1035 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 TXKP42681 527 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 GYG1P46976 350 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 PLTPP55058 493 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 RWDD2BP57060 319 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 PTENP60484 403 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 GRM4Q14833 912 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 LRRC14Q15048 493 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 DENND2CQ68D51 928 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 FOXR2Q6PJQ5 311 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 FITM2Q8N6M3 262 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 TBC1D16Q8TBP0 767 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 RAD54LQ92698 747 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 UTP4Q969X6 686 aaKnown RBP7.37□□□□□ -1.23
VPS39-202ENST00000348544 DNAJC19Q96DA6 116 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 NAF1Q96HR8 494 aaKnown RBP7.37□□□□□ -1.23
VPS39-202ENST00000348544 ERP44Q9BS26 406 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 OSBPL1AQ9BXW6 950 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 RAB17Q9H0T7 212 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 DCP1AQ9NPI6 582 aaPredicted RBP7.37□□□□□ -1.23
VPS39-202ENST00000348544 GRHL1Q9NZI5 618 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 STK17AQ9UEE5 414 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 AJAP1Q9UKB5 411 aaPredicted RBP7.37□□□□□ -1.23
VPS39-202ENST00000348544 SNX24Q9Y343 169 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS39-202ENST00000348544 NUP98P52948 1817 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 ZNF804BA4D1E1 1349 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 KIAA1551Q9HCM1 1747 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 CCDC169A6NNP5 214 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 AGTP01019 485 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 SLC9A1P19634 815 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 CTCFP49711 727 aaPredicted RBP7.37□□□□□ -1.23
VPS39-202ENST00000348544 PDE6CP51160 858 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 MARSP56192 900 aaKnown RBP7.37□□□□□ -1.23
VPS39-202ENST00000348544 MGAT5Q09328 741 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 COASYQ13057 564 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 NONOQ15233 471 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS39-202ENST00000348544 TAF11Q15544 211 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 ECM1Q16610 540 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 C10orf76Q5T2E6 689 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 GALNT17Q6IS24 598 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 ANO7Q6IWH7 933 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 NEK8Q86SG6 692 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 COL23A1Q86Y22 540 aaPredicted RBP7.37□□□□□ -1.23
VPS39-202ENST00000348544 NELFCDQ8IXH7 590 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 OLIG1Q8TAK6 271 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 RMDN2Q96LZ7 410 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 MTMR9Q96QG7 549 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 NSRP1Q9H0G5 558 aaKnown RBP7.37□□□□□ -1.23
VPS39-202ENST00000348544 TBC1D7Q9P0N9 293 aa7.37□□□□□ -1.23
VPS39-202ENST00000348544 DBR1Q9UK59 544 aaKnown RBP7.37□□□□□ -1.23
VPS39-202ENST00000348544 TTC7AQ9ULT0 858 aaPredicted RBP7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms