RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 NFS1Q9Y697 457 aa17.33■□□□□ 0.37
HMGA1-202ENST00000347617 ESYT2A0FGR8 921 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 USP17L5A8MUK1 530 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 PALMO75781 387 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 ANXA13P27216 316 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 SLC1A4P43007 532 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 PTGER2P43116 358 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 CACNB3P54284 484 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 ZNF543Q08ER8 600 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 TDRD12Q587J7 1177 aaKnown RBP17.33■□□□□ 0.36
HMGA1-202ENST00000347617 SV2BQ7L1I2 683 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 MS4A14Q96JA4 679 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 HINFPQ9BQA5 517 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 CENPHQ9H3R5 247 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 PPANQ9NQ55 473 aaKnown RBP17.33■□□□□ 0.36
HMGA1-202ENST00000347617 BATF3Q9NR55 127 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 SMARCAL1Q9NZC9 954 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 SALL4Q9UJQ4 1053 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 PCDHA6Q9UN73 950 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 PCDHA8Q9Y5H6 950 aa17.33■□□□□ 0.36
HMGA1-202ENST00000347617 STXBP3O00186 592 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 NFKBIEO00221 500 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 KIF3CO14782 793 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 RAD51CO43502 376 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 MGRN1O60291 552 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 GNA14O95837 355 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 GNA11P29992 359 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 SCTRP47872 440 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 SATB1Q01826 763 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 GFPT1Q06210 699 aaPredicted RBP17.32■□□□□ 0.36
HMGA1-202ENST00000347617 SLC18A3Q16572 532 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 CRELD2Q6UXH1 353 aaPredicted RBP17.32■□□□□ 0.36
HMGA1-202ENST00000347617 CROCCP2Q86T23 111 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 SCFD2Q8WU76 684 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 DCAF4Q8WV16 495 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 HOOK2Q96ED9 719 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 PSMB7Q99436 277 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 TMEM60Q9H2L4 133 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 SLITRK6Q9H5Y7 841 aa17.32■□□□□ 0.36
HMGA1-202ENST00000347617 SEC63Q9UGP8 760 aaKnown RBP17.32■□□□□ 0.36
HMGA1-202ENST00000347617 BUB1O43683 1085 aa17.31■□□□□ 0.36
HMGA1-202ENST00000347617 CTNNA1P35221 906 aaKnown RBP17.31■□□□□ 0.36
HMGA1-202ENST00000347617 ZNF280AP59817 542 aaPredicted RBP17.31■□□□□ 0.36
HMGA1-202ENST00000347617 RIPK1Q13546 671 aa17.31■□□□□ 0.36
HMGA1-202ENST00000347617 HLTFQ14527 1009 aaKnown RBP eCLIP17.31■□□□□ 0.36
HMGA1-202ENST00000347617 SEPT2Q15019 361 aa17.31■□□□□ 0.36
HMGA1-202ENST00000347617 RPS6KA1Q15418 735 aa17.31■□□□□ 0.36
HMGA1-202ENST00000347617 CEP120Q8N960 986 aa17.31■□□□□ 0.36
HMGA1-202ENST00000347617 KIAA0895Q8NCT3 520 aa17.31■□□□□ 0.36
HMGA1-202ENST00000347617 OSBPL7Q9BZF2 842 aa17.31■□□□□ 0.36
HMGA1-202ENST00000347617 PP2D1A8MPX8 630 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 MPHOSPH10O00566 681 aaKnown RBP17.3■□□□□ 0.36
HMGA1-202ENST00000347617 GOLGA8HP0CJ92 632 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 VEGFAP15692 232 aaPredicted RBP17.3■□□□□ 0.36
HMGA1-202ENST00000347617 HPDP32754 393 aaPredicted RBP17.3■□□□□ 0.36
HMGA1-202ENST00000347617 MRPS25P82663 173 aaKnown RBP17.3■□□□□ 0.36
HMGA1-202ENST00000347617 MAP3K10Q02779 954 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 ZNF844Q08AG5 666 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 ABCB5Q2M3G0 1257 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 GMCL1P1Q8NEA9 526 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 CSRNP1Q96S65 589 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 FAM114A2Q9NRY5 505 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 TPX2Q9ULW0 747 aaKnown RBP17.3■□□□□ 0.36
HMGA1-202ENST00000347617 MYH7BA7E2Y1 1941 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 BAZ2BQ9UIF8 2168 aaKnown RBP17.3■□□□□ 0.36
HMGA1-202ENST00000347617 CFAP73A6NFT4 308 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 EPHB6O15197 1021 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 ITIH4Q14624 930 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 PPP2R5EQ16537 467 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 RBM26Q5T8P6 1007 aaKnown RBP17.3■□□□□ 0.36
HMGA1-202ENST00000347617 PPP1R18Q6NYC8 613 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 ANKS4BQ8N8V4 417 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 CCDC26Q8TAB7 109 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 RSRC1Q96IZ7 334 aaKnown RBP17.3■□□□□ 0.36
HMGA1-202ENST00000347617 CEP63Q96MT8 703 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 C6orf50Q9HD87 102 aa17.3■□□□□ 0.36
HMGA1-202ENST00000347617 ZBTB12Q9Y330 459 aaPredicted RBP17.3■□□□□ 0.36
HMGA1-202ENST00000347617 ESYT3A0FGR9 886 aa17.29■□□□□ 0.36
HMGA1-202ENST00000347617 TULP1O00294 542 aaPredicted RBP17.29■□□□□ 0.36
HMGA1-202ENST00000347617 FCER1AP12319 257 aa17.29■□□□□ 0.36
HMGA1-202ENST00000347617 USP11P51784 963 aa17.29■□□□□ 0.36
HMGA1-202ENST00000347617 ERVK-9P63128 1117 aa17.29■□□□□ 0.36
HMGA1-202ENST00000347617 ODF2Q5BJF6 829 aa17.29■□□□□ 0.36
HMGA1-202ENST00000347617 TLDC1Q6P9B6 456 aa17.29■□□□□ 0.36
HMGA1-202ENST00000347617 CPLX4Q7Z7G2 160 aa17.29■□□□□ 0.36
HMGA1-202ENST00000347617 HOOK3Q86VS8 718 aa17.29■□□□□ 0.36
HMGA1-202ENST00000347617 MAB21L3Q8N8X9 362 aa17.29■□□□□ 0.36
HMGA1-202ENST00000347617 LMBR1Q8WVP7 490 aa17.29■□□□□ 0.36
HMGA1-202ENST00000347617 CCT6BQ92526 530 aa17.29■□□□□ 0.36
HMGA1-202ENST00000347617 RAPGEF5Q92565 580 aa17.29■□□□□ 0.36
HMGA1-202ENST00000347617 HVCN1Q96D96 273 aa17.29■□□□□ 0.36
HMGA1-202ENST00000347617 AIPL1Q9NZN9 384 aa17.29■□□□□ 0.36
HMGA1-202ENST00000347617 BZW2Q9Y6E2 419 aaKnown RBP17.29■□□□□ 0.36
HMGA1-202ENST00000347617 PNMA6FA0A0J9YX94 578 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 PGRMC1O00264 195 aaKnown RBP17.28■□□□□ 0.36
HMGA1-202ENST00000347617 DNM1LO00429 736 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 PPP1R12AO14974 1030 aaPredicted RBP17.28■□□□□ 0.36
HMGA1-202ENST00000347617 KIF4AO95239 1232 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 EEF2P13639 858 aaKnown RBP17.28■□□□□ 0.36
HMGA1-202ENST00000347617 INF2Q27J81 1249 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms