RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 PLS1Q14651 629 aa16.32■□□□□ 0.2
VIPAS39-202ENST00000343765 NAB2Q15742 525 aa16.32■□□□□ 0.2
VIPAS39-202ENST00000343765 CEP55Q53EZ4 464 aa16.32■□□□□ 0.2
VIPAS39-202ENST00000343765 MAEAQ7L5Y9 396 aa16.32■□□□□ 0.2
VIPAS39-202ENST00000343765 RNF10Q8N5U6 811 aaKnown RBP16.32■□□□□ 0.2
VIPAS39-202ENST00000343765 BANK1Q8NDB2 785 aa16.32■□□□□ 0.2
VIPAS39-202ENST00000343765 RBM46Q8TBY0 533 aaKnown RBP16.32■□□□□ 0.2
VIPAS39-202ENST00000343765 RANBP17Q9H2T7 1088 aaKnown RBP16.32■□□□□ 0.2
VIPAS39-202ENST00000343765 UNC45AQ9H3U1 944 aa16.32■□□□□ 0.2
VIPAS39-202ENST00000343765 GOLPH3Q9H4A6 298 aa16.32■□□□□ 0.2
VIPAS39-202ENST00000343765 VCPKMTQ9H867 229 aa16.32■□□□□ 0.2
VIPAS39-202ENST00000343765 RBM12Q9NTZ6 932 aaKnown RBP16.32■□□□□ 0.2
VIPAS39-202ENST00000343765 HPCAL4Q9UM19 191 aa16.32■□□□□ 0.2
VIPAS39-202ENST00000343765 PRLRP16471 622 aa16.31■□□□□ 0.2
VIPAS39-202ENST00000343765 C1orf186Q6ZWK4 172 aa16.31■□□□□ 0.2
VIPAS39-202ENST00000343765 LDHDQ86WU2 507 aa16.31■□□□□ 0.2
VIPAS39-202ENST00000343765 MMGT1Q8N4V1 131 aa16.31■□□□□ 0.2
VIPAS39-202ENST00000343765 SLC35C1Q96A29 364 aa16.31■□□□□ 0.2
VIPAS39-202ENST00000343765 AGBL1Q96MI9 1066 aa16.31■□□□□ 0.2
VIPAS39-202ENST00000343765 TUFT1Q9NNX1 390 aa16.31■□□□□ 0.2
VIPAS39-202ENST00000343765 MRPL11Q9Y3B7 192 aaKnown RBP16.31■□□□□ 0.2
VIPAS39-202ENST00000343765 CYP2J2P51589 502 aa16.31■□□□□ 0.2
VIPAS39-202ENST00000343765 EPHA7Q15375 998 aa16.31■□□□□ 0.2
VIPAS39-202ENST00000343765 BMT2Q1RMZ1 405 aa16.31■□□□□ 0.2
VIPAS39-202ENST00000343765 DPY19L2P1Q6NXN4 242 aa16.31■□□□□ 0.2
VIPAS39-202ENST00000343765 GBP6Q6ZN66 633 aa16.31■□□□□ 0.2
VIPAS39-202ENST00000343765 TRMT1LQ7Z2T5 733 aaKnown RBP16.31■□□□□ 0.2
VIPAS39-202ENST00000343765 SLC5A5Q92911 643 aa16.31■□□□□ 0.2
VIPAS39-202ENST00000343765 PARVGQ9HBI0 331 aa16.31■□□□□ 0.2
VIPAS39-202ENST00000343765 ZMYM2Q9UBW7 1377 aa16.3■□□□□ 0.2
VIPAS39-202ENST00000343765 CCDC66A2RUB6 948 aa16.3■□□□□ 0.2
VIPAS39-202ENST00000343765 TULP1O00294 542 aaPredicted RBP16.3■□□□□ 0.2
VIPAS39-202ENST00000343765 PPP2R5CQ13362 524 aa16.3■□□□□ 0.2
VIPAS39-202ENST00000343765 SPDYE2Q495Y8 402 aa16.3■□□□□ 0.2
VIPAS39-202ENST00000343765 ZNF772Q68DY9 489 aaPredicted RBP16.3■□□□□ 0.2
VIPAS39-202ENST00000343765 IRF2BP2Q7Z5L9 587 aa16.3■□□□□ 0.2
VIPAS39-202ENST00000343765 GAP43P17677 238 aa16.3■□□□□ 0.2
VIPAS39-202ENST00000343765 FAM186BQ8IYM0 893 aa16.3■□□□□ 0.2
VIPAS39-202ENST00000343765 TTLL6Q8N841 843 aa16.3■□□□□ 0.2
VIPAS39-202ENST00000343765 PLCB1Q9NQ66 1216 aa16.3■□□□□ 0.2
VIPAS39-202ENST00000343765 OLFML3Q9NRN5 406 aa16.3■□□□□ 0.2
VIPAS39-202ENST00000343765 VIL1P09327 827 aaKnown RBP16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 NOP2P46087 812 aaKnown RBP16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 TRAF1Q13077 416 aa16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 DGKZQ13574 1117 aa16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 ODR4Q5SWX8 454 aa16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 C8orf74Q6P047 294 aa16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 SND1Q7KZF4 910 aaKnown RBP eCLIP16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 FAM178BQ8IXR5 827 aa16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 FAM71BQ8TC56 605 aa16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 LXNQ9BS40 222 aa16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 METTL14Q9HCE5 456 aaKnown RBP16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 HOMER2Q9NSB8 354 aa16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 COL2A1P02458 1487 aaPredicted RBP16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 GRID2IPA4D2P6 1211 aa16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 IPO5O00410 1097 aaKnown RBP16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 RNF40O75150 1001 aa16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 EXOC4Q96A65 974 aa16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 GMLQ99445 158 aa16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 STK32BQ9NY57 414 aa16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 CCPG1Q9ULG6 757 aa16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 SYNPO2Q9UMS6 1093 aa16.29■□□□□ 0.2
VIPAS39-202ENST00000343765 SHTN1A0MZ66 631 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 SLC16A3O15427 465 aaKnown RBP16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 TRIM49P0CI25 452 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 TRIM49CP0CI26 452 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 CFAP221Q4G0U5 840 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 ZNF572Q7Z3I7 529 aaPredicted RBP16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 CPXCR1Q8N123 301 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 MSL3Q8N5Y2 521 aaKnown RBP16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 RDH13Q8NBN7 331 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 ZNF341Q9BYN7 854 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 EHMT1Q9H9B1 1298 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 SIX2Q9NPC8 291 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 GFPT2O94808 682 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 SYF2O95926 243 aaKnown RBP16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 GGCXP38435 758 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 CAP2P40123 477 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 HNRNPH2P55795 449 aaKnown RBP16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 SH2D3AQ9BRG2 576 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 TEKT3Q9BXF9 490 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 FAM204AQ9H8W3 233 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 BCS1LQ9Y276 419 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 COL4A5P29400 1685 aa16.28■□□□□ 0.2
VIPAS39-202ENST00000343765 ARHGEF35A5YM69 484 aa16.27■□□□□ 0.2
VIPAS39-202ENST00000343765 NFIBO00712 420 aa16.27■□□□□ 0.2
VIPAS39-202ENST00000343765 INPP5BP32019 993 aa16.27■□□□□ 0.2
VIPAS39-202ENST00000343765 PSMC2P35998 433 aaKnown RBP16.27■□□□□ 0.2
VIPAS39-202ENST00000343765 NBPF9Q3BBW0 867 aa16.27■□□□□ 0.2
VIPAS39-202ENST00000343765 GRIPAP1Q4V328 841 aa16.27■□□□□ 0.2
VIPAS39-202ENST00000343765 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.27■□□□□ 0.2
VIPAS39-202ENST00000343765 IL31RAQ8NI17 732 aa16.27■□□□□ 0.2
VIPAS39-202ENST00000343765 NACC1Q96RE7 527 aa16.27■□□□□ 0.2
VIPAS39-202ENST00000343765 VIPAS39Q9H9C1 493 aa16.27■□□□□ 0.2
VIPAS39-202ENST00000343765 MED4Q9NPJ6 270 aa16.27■□□□□ 0.2
VIPAS39-202ENST00000343765 TSKSQ9UJT2 592 aa16.27■□□□□ 0.2
VIPAS39-202ENST00000343765 NAGPAQ9UK23 515 aa16.27■□□□□ 0.2
VIPAS39-202ENST00000343765 ALKBH5Q6P6C2 394 aaKnown RBP16.27■□□□□ 0.2
VIPAS39-202ENST00000343765 AENQ8WTP8 325 aaKnown RBP16.27■□□□□ 0.2
VIPAS39-202ENST00000343765 HOOK2Q96ED9 719 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms