RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 PACSIN1Q9BY11 444 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 VPS33BQ9H267 617 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 SCUBE2Q9NQ36 999 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 UBAP1Q9NZ09 502 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 MAPRE3Q9UPY8 281 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 MRPL11Q9Y3B7 192 aaKnown RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 HOXA2O43364 376 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 ARL1P40616 181 aaPredicted RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 COG7P83436 770 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 MAPRE2Q15555 327 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 CAPRIN2Q6IMN6 1127 aaKnown RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 STYK1Q6J9G0 422 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 EFL1Q7Z2Z2 1120 aaKnown RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 SESTD1Q86VW0 696 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 FAM186BQ8IYM0 893 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 MAGEB6Q8N7X4 407 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 FAM122AQ96E09 287 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 ARL2BPQ9Y2Y0 163 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 CPDO75976 1380 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 KRT87PA6NCN2 255 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 C16orf96A6NNT2 1141 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 SEMA3EO15041 775 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 TMCC1O94876 653 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 IL6STP40189 918 aaPredicted RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 ALDH7A1P49419 539 aaKnown RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 PDE6CP51160 858 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 NEK2P51955 445 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 SSRP1Q08945 709 aaKnown RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 MAP2K5Q13163 448 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 PUM3Q15397 648 aaKnown RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 NSMFQ6X4W1 530 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 DPH6Q7L8W6 267 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 PNMA5Q96PV4 448 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 FNBP1Q96RU3 617 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 STK39Q9UEW8 545 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 PACSIN2Q9UNF0 486 aaPredicted RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 ATXN2Q99700 1313 aaKnown RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 DOT1LQ8TEK3 1739 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 BCAR3O75815 825 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 CA4P22748 312 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 GARSP41250 739 aaKnown RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 SYKP43405 635 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 ADKP55263 362 aaKnown RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 RAB30Q15771 203 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 USPL1Q5W0Q7 1092 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 KRT79Q5XKE5 535 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 C8orf74Q6P047 294 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 RASEFQ8IZ41 740 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 EPSTI1Q96J88 318 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 PRRG3Q9BZD7 231 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 HELLSQ9NRZ9 838 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 SALL3Q9BXA9 1300 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 ESYT2A0FGR8 921 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 INPP4BO15327 924 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 NDUFV1P49821 464 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 EPS8Q12929 822 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 ANO6Q4KMQ2 910 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 PPP6R3Q5H9R7 873 aaPredicted RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 ICE2Q659A1 982 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 LRRC8EQ6NSJ5 796 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 MFN1Q8IWA4 741 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 TNIP2Q8NFZ5 429 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 USP6NLQ92738 828 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 DNAJC12Q9UKB3 198 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 AHDC1Q5TGY3 1603 aaPredicted RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 A0A087WUV0 522 aaPredicted RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 KPNA6O60684 536 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 HEXIM1O94992 359 aaKnown RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 ZNF445P59923 1031 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 SATB1Q01826 763 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 TMEM132BQ14DG7 1078 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 TBCCQ15814 346 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 ARMC3Q5W041 872 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 USP17L2Q6R6M4 530 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 UBE2R2Q712K3 238 aaPredicted RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 VSIG1Q86XK7 387 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 CCDC90BQ9GZT6 254 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 DHX36Q9H2U1 1008 aaKnown RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 ZBTB21Q9ULJ3 1066 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 ZNF148Q9UQR1 794 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 CHMP2AO43633 222 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 DEAF1O75398 565 aaPredicted RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 FDX1P10109 184 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 CRKLP46109 303 aaKnown RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 PCYT1AP49585 367 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 COPB1P53618 953 aaKnown RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 OCA2Q04671 838 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 LRRC23Q53EV4 343 aaPredicted RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 SLC45A4Q5BKX6 768 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 CLEC4GQ6UXB4 293 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.53□□□□□ -1.84
CSMD3-202ENST00000339701 PARD3BQ8TEW8 1205 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 TMEM169Q96HH4 297 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 NRBP2Q9NSY0 501 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 POLR3EQ9NVU0 708 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 WDR91A4D1P6 747 aa3.53□□□□□ -1.84
CSMD3-202ENST00000339701 ABCB1P08183 1280 aaPredicted RBP3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms