RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 IL31RAQ8NI17 732 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 SLC35C1Q96A29 364 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 HOOK2Q96ED9 719 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 LXNQ9BS40 222 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 MYOZ2Q9NPC6 264 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 SMARCAL1Q9NZC9 954 aa16.31■□□□□ 0.2
CLCNKA-201ENST00000331433 H3BQF6 201 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 SETQ01105 290 aaPredicted RBP16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 COG2Q14746 738 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 SLC18A3Q16572 532 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 KLHDC7AQ5VTJ3 777 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 CPXCR1Q8N123 301 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 RPGRIP1Q96KN7 1286 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 NOX5Q96PH1 765 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 OSBPL9Q96SU4 736 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 TEKT3Q9BXF9 490 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 PACSIN1Q9BY11 444 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 WDR11Q9BZH6 1224 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 EHD2Q9NZN4 543 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 FRMPD4Q14CM0 1322 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 PHF20L1A8MW92 1017 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 ICAM1P05362 532 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 EPHA7Q15375 998 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 KCTD17Q8N5Z5 321 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 SPAG5Q96R06 1193 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 NACC1Q96RE7 527 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 FIZ1Q96SL8 496 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 MXRA8Q9BRK3 442 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 PDE11AQ9HCR9 933 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 HOMER2Q9NSB8 354 aa16.3■□□□□ 0.2
CLCNKA-201ENST00000331433 SLC16A3O15427 465 aaKnown RBP16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 HSD17B4P51659 736 aa16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 MAP3K10Q02779 954 aa16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 B3GNT9Q6UX72 402 aa16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 HINFPQ9BQA5 517 aa16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 TLR10Q9BXR5 811 aa16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 GBP3Q9H0R5 595 aa16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 PLCB1Q9NQ66 1216 aa16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 AJAP1Q9UKB5 411 aaPredicted RBP16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 EIF3DO15371 548 aaKnown RBP eCLIP16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 TUBBP07437 444 aa16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 KLRC1P26715 233 aa16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 PTK2Q05397 1052 aa16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 CASP8Q14790 479 aa16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 CIAPIN1Q6FI81 312 aa16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 IRF2BP2Q7Z5L9 587 aa16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 METTL14Q9HCE5 456 aaKnown RBP16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 GCNT4Q9P109 453 aa16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 HYOU1Q9Y4L1 999 aa16.29■□□□□ 0.2
CLCNKA-201ENST00000331433 ODR4Q5SWX8 454 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 GJB7Q6PEY0 223 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 ZNF720Q7Z2F6 126 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 FAM178BQ8IXR5 827 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 TXLNBQ8N3L3 684 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 RNF10Q8N5U6 811 aaKnown RBP16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 RBM46Q8TBY0 533 aaKnown RBP16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 CLEC4DQ8WXI8 215 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 KCNH7Q9NS40 1196 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 MYH11P35749 1972 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 ALAS1P13196 640 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 DNA2P51530 1060 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 ZNF131P52739 623 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 KIAA0753Q2KHM9 967 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 MAEAQ7L5Y9 396 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 ZNF571Q7Z3V5 609 aaPredicted RBP16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 DNAAF5Q86Y56 855 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 GSPT2Q8IYD1 628 aaKnown RBP16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 FAM186BQ8IYM0 893 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 BORCS6Q96GS4 357 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 RAVER2Q9HCJ3 691 aaKnown RBP16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 SIX2Q9NPC8 291 aa16.28■□□□□ 0.2
CLCNKA-201ENST00000331433 ARHGEF35A5YM69 484 aa16.27■□□□□ 0.2
CLCNKA-201ENST00000331433 LRRIQ3A6PVS8 624 aaPredicted RBP16.27■□□□□ 0.2
CLCNKA-201ENST00000331433 PALMO75781 387 aa16.27■□□□□ 0.2
CLCNKA-201ENST00000331433 PRLRP16471 622 aa16.27■□□□□ 0.2
CLCNKA-201ENST00000331433 MATR3P43243 847 aaKnown RBP eCLIP16.27■□□□□ 0.2
CLCNKA-201ENST00000331433 GYS2P54840 703 aa16.27■□□□□ 0.2
CLCNKA-201ENST00000331433 MRPS25P82663 173 aaKnown RBP16.27■□□□□ 0.2
CLCNKA-201ENST00000331433 GBP6Q6ZN66 633 aa16.27■□□□□ 0.2
CLCNKA-201ENST00000331433 PRPF38AQ8NAV1 312 aaKnown RBP16.27■□□□□ 0.2
CLCNKA-201ENST00000331433 TEPSINQ96N21 525 aa16.27■□□□□ 0.2
CLCNKA-201ENST00000331433 VPS33BQ9H267 617 aa16.27■□□□□ 0.2
CLCNKA-201ENST00000331433 LUC7LQ9NQ29 371 aaKnown RBP16.27■□□□□ 0.2
CLCNKA-201ENST00000331433 TARSL2A2RTX5 802 aaKnown RBP16.27■□□□□ 0.19
CLCNKA-201ENST00000331433 N4BP1O75113 896 aaKnown RBP16.27■□□□□ 0.19
CLCNKA-201ENST00000331433 FTCDO95954 541 aa16.27■□□□□ 0.19
CLCNKA-201ENST00000331433 TCP1P17987 556 aaKnown RBP16.27■□□□□ 0.19
CLCNKA-201ENST00000331433 CYP2J2P51589 502 aa16.27■□□□□ 0.19
CLCNKA-201ENST00000331433 PLS1Q14651 629 aa16.27■□□□□ 0.19
CLCNKA-201ENST00000331433 NAB2Q15742 525 aa16.27■□□□□ 0.19
CLCNKA-201ENST00000331433 IQCEQ6IPM2 695 aa16.27■□□□□ 0.19
CLCNKA-201ENST00000331433 SPATA4Q8NEY3 305 aa16.27■□□□□ 0.19
CLCNKA-201ENST00000331433 RIT2Q99578 217 aa16.27■□□□□ 0.19
CLCNKA-201ENST00000331433 DEFB129Q9H1M3 183 aa16.27■□□□□ 0.19
CLCNKA-201ENST00000331433 FER1L6Q2WGJ9 1857 aa16.26■□□□□ 0.19
CLCNKA-201ENST00000331433 ASTN2O75129 1339 aaPredicted RBP16.26■□□□□ 0.19
CLCNKA-201ENST00000331433 RPTORQ8N122 1335 aa16.26■□□□□ 0.19
CLCNKA-201ENST00000331433 HIP1RO75146 1068 aa16.26■□□□□ 0.19
CLCNKA-201ENST00000331433 MYBL2P10244 700 aa16.26■□□□□ 0.19
CLCNKA-201ENST00000331433 MUTP22033 750 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms