RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 PTPN11Q06124 597 aaPredicted RBP18.39■□□□□ 0.53
PDLIM1-201ENST00000329399 GPNMBQ14956 572 aa18.39■□□□□ 0.53
PDLIM1-201ENST00000329399 CT47A1Q5JQC4 288 aaPredicted RBP18.39■□□□□ 0.53
PDLIM1-201ENST00000329399 TDHQ8IZJ6 230 aa18.39■□□□□ 0.53
PDLIM1-201ENST00000329399 TRIML1Q8N9V2 468 aa18.39■□□□□ 0.53
PDLIM1-201ENST00000329399 SYMPKQ92797 1274 aaKnown RBP18.39■□□□□ 0.53
PDLIM1-201ENST00000329399 ZBTB10Q96DT7 871 aa18.39■□□□□ 0.53
PDLIM1-201ENST00000329399 ZNF577Q9BSK1 485 aa18.39■□□□□ 0.53
PDLIM1-201ENST00000329399 CHD9Q3L8U1 2897 aa18.39■□□□□ 0.53
PDLIM1-201ENST00000329399 TREHO43280 583 aa18.38■□□□□ 0.53
PDLIM1-201ENST00000329399 LGR5O75473 907 aa18.38■□□□□ 0.53
PDLIM1-201ENST00000329399 SMC2O95347 1197 aa18.38■□□□□ 0.53
PDLIM1-201ENST00000329399 ATG7O95352 703 aa18.38■□□□□ 0.53
PDLIM1-201ENST00000329399 HOXC8P31273 242 aa18.38■□□□□ 0.53
PDLIM1-201ENST00000329399 FPGSQ05932 587 aa18.38■□□□□ 0.53
PDLIM1-201ENST00000329399 CALCRLQ16602 461 aa18.38■□□□□ 0.53
PDLIM1-201ENST00000329399 TRIM71Q2Q1W2 868 aaKnown RBP18.38■□□□□ 0.53
PDLIM1-201ENST00000329399 LONRF3Q496Y0 759 aa18.38■□□□□ 0.53
PDLIM1-201ENST00000329399 SLFN12Q8IYM2 578 aa18.38■□□□□ 0.53
PDLIM1-201ENST00000329399 LRCH3Q96II8 777 aa18.38■□□□□ 0.53
PDLIM1-201ENST00000329399 MBOAT7Q96N66 472 aa18.38■□□□□ 0.53
PDLIM1-201ENST00000329399 MTMR9Q96QG7 549 aa18.38■□□□□ 0.53
PDLIM1-201ENST00000329399 BPIFA3Q9BQP9 254 aa18.38■□□□□ 0.53
PDLIM1-201ENST00000329399 KATNAL1Q9BW62 490 aa18.38■□□□□ 0.53
PDLIM1-201ENST00000329399 TET1Q8NFU7 2136 aa18.37■□□□□ 0.53
PDLIM1-201ENST00000329399 SLC37A4O43826 429 aa18.37■□□□□ 0.53
PDLIM1-201ENST00000329399 SUPT20HL2P0C7V6 817 aa18.37■□□□□ 0.53
PDLIM1-201ENST00000329399 UBA7P41226 1012 aa18.37■□□□□ 0.53
PDLIM1-201ENST00000329399 CCDC173Q0VFZ6 552 aa18.37■□□□□ 0.53
PDLIM1-201ENST00000329399 NT5DC1Q5TFE4 455 aa18.37■□□□□ 0.53
PDLIM1-201ENST00000329399 ABHD15Q6UXT9 468 aa18.37■□□□□ 0.53
PDLIM1-201ENST00000329399 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.37■□□□□ 0.53
PDLIM1-201ENST00000329399 GTPBP4Q9BZE4 634 aaKnown RBP18.37■□□□□ 0.53
PDLIM1-201ENST00000329399 OSBPL7Q9BZF2 842 aa18.37■□□□□ 0.53
PDLIM1-201ENST00000329399 ATP4AP20648 1035 aa18.36■□□□□ 0.53
PDLIM1-201ENST00000329399 NLRP12P59046 1061 aa18.36■□□□□ 0.53
PDLIM1-201ENST00000329399 ADAM17P78536 824 aa18.36■□□□□ 0.53
PDLIM1-201ENST00000329399 GRIN1Q05586 938 aa18.36■□□□□ 0.53
PDLIM1-201ENST00000329399 POSTNQ15063 836 aa18.36■□□□□ 0.53
PDLIM1-201ENST00000329399 TMEM240Q5SV17 173 aa18.36■□□□□ 0.53
PDLIM1-201ENST00000329399 TRAF7Q6Q0C0 670 aa18.36■□□□□ 0.53
PDLIM1-201ENST00000329399 DDX25Q9UHL0 483 aaKnown RBP18.36■□□□□ 0.53
PDLIM1-201ENST00000329399 COL6A3P12111 3177 aa18.36■□□□□ 0.53
PDLIM1-201ENST00000329399 SCN5AQ14524 2016 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 IGKV6D-21A0A0A0MT36 114 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 ACTN4O43707 911 aaKnown RBP18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 ZNF165P49910 485 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 Q4G0T1 1027 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 ANO6Q4KMQ2 910 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 MARCH8Q5T0T0 291 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 ZNF365Q70YC5 407 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 CCDC60Q8IWA6 550 aaPredicted RBP18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 KCTD17Q8N5Z5 321 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 IGSF22Q8N9C0 903 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 LMBR1Q8WVP7 490 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 GLG1Q92896 1179 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 SLC5A5Q92911 643 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 EPSTI1Q96J88 318 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 TMEM60Q9H2L4 133 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 DACH1Q9UI36 760 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 NOD1Q9Y239 953 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 CHD7Q9P2D1 2997 aa18.35■□□□□ 0.53
PDLIM1-201ENST00000329399 A0A1W2PPC1 479 aa18.34■□□□□ 0.53
PDLIM1-201ENST00000329399 C17orf102A2RUQ5 167 aa18.34■□□□□ 0.53
PDLIM1-201ENST00000329399 IQCF3P0C7M6 154 aa18.34■□□□□ 0.53
PDLIM1-201ENST00000329399 IL17AQ16552 155 aa18.34■□□□□ 0.53
PDLIM1-201ENST00000329399 TCTN1Q2MV58 587 aa18.34■□□□□ 0.53
PDLIM1-201ENST00000329399 SWSAP1Q6NVH7 229 aa18.34■□□□□ 0.53
PDLIM1-201ENST00000329399 SERINC5Q86VE9 423 aa18.34■□□□□ 0.53
PDLIM1-201ENST00000329399 TMEM199Q8N511 208 aa18.34■□□□□ 0.53
PDLIM1-201ENST00000329399 SPATA20Q8TB22 786 aa18.34■□□□□ 0.53
PDLIM1-201ENST00000329399 ETNPPLQ8TBG4 499 aa18.34■□□□□ 0.53
PDLIM1-201ENST00000329399 ATP6V0A1Q93050 837 aa18.34■□□□□ 0.53
PDLIM1-201ENST00000329399 FAM20AQ96MK3 541 aa18.34■□□□□ 0.53
PDLIM1-201ENST00000329399 SMARCAD1Q9H4L7 1026 aa18.34■□□□□ 0.53
PDLIM1-201ENST00000329399 SERTAD1Q9UHV2 236 aa18.34■□□□□ 0.53
PDLIM1-201ENST00000329399 PSMD10O75832 226 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 CKBP12277 381 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 SETQ01105 290 aaPredicted RBP18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 MBTPS1Q14703 1052 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 PLCB4Q15147 1175 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 SPECC1Q5M775 1068 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 ZNF618Q5T7W0 954 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 FAM109BQ6ICB4 259 aaPredicted RBP18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 RUFY4Q6ZNE9 571 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 DEFB128Q7Z7B8 93 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 TRAPPC12Q8WVT3 735 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 SMARCE1Q969G3 411 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 CALML4Q96GE6 196 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 GSDMAQ96QA5 445 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 UNC45AQ9H3U1 944 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 IL23AQ9NPF7 189 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 DISC1Q9NRI5 854 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 TBC1D22BQ9NU19 505 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 CXXC1Q9P0U4 656 aaPredicted RBP18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 EMSYQ7Z589 1322 aa18.33■□□□□ 0.53
PDLIM1-201ENST00000329399 SMTNL1A8MU46 457 aa18.33■□□□□ 0.52
PDLIM1-201ENST00000329399 MARCH6O60337 910 aa18.33■□□□□ 0.52
PDLIM1-201ENST00000329399 SARSP49591 514 aaKnown RBP18.33■□□□□ 0.52
PDLIM1-201ENST00000329399 STAT5BP51692 787 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms