RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 MDH1P40925 334 aaKnown RBP11.46□□□□□ -0.58
COL3A1-202ENST00000317840 GJB7Q6PEY0 223 aa11.46□□□□□ -0.58
COL3A1-202ENST00000317840 CCDC25Q86WR0 208 aa11.46□□□□□ -0.58
COL3A1-202ENST00000317840 DYDC1Q8WWB3 177 aa11.46□□□□□ -0.58
COL3A1-202ENST00000317840 PBKQ96KB5 322 aa11.46□□□□□ -0.58
COL3A1-202ENST00000317840 NAP1L4Q99733 375 aaKnown RBP11.46□□□□□ -0.58
COL3A1-202ENST00000317840 FBXL5Q9UKA1 691 aa11.46□□□□□ -0.58
COL3A1-202ENST00000317840 ZC3H4Q9UPT8 1303 aaKnown RBP11.46□□□□□ -0.58
COL3A1-202ENST00000317840 MEFVO15553 781 aaPredicted RBP11.45□□□□□ -0.58
COL3A1-202ENST00000317840 LRRN2O75325 713 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 CYP11B2P19099 503 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 TNFAIP3P21580 790 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 KNOP1Q1ED39 458 aaKnown RBP11.45□□□□□ -0.58
COL3A1-202ENST00000317840 QRICH1Q2TAL8 776 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 MEI1Q5TIA1 1274 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 SYCE1Q8N0S2 351 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 PIGOQ8TEQ8 1089 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 DNAJC19Q96DA6 116 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 SCLT1Q96NL6 688 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 EPN3Q9H201 632 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 DHX36Q9H2U1 1008 aaKnown RBP11.45□□□□□ -0.58
COL3A1-202ENST00000317840 CICQ96RK0 1608 aaPredicted RBP11.45□□□□□ -0.58
COL3A1-202ENST00000317840 SLIT2O94813 1529 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 STRCQ7RTU9 1775 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 HOXA13P31271 388 aaPredicted RBP11.45□□□□□ -0.58
COL3A1-202ENST00000317840 HDLBPQ00341 1268 aaKnown RBP11.45□□□□□ -0.58
COL3A1-202ENST00000317840 ZNF571Q7Z3V5 609 aaPredicted RBP11.45□□□□□ -0.58
COL3A1-202ENST00000317840 SLFN12Q8IYM2 578 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 ZNF473Q8WTR7 871 aaKnown RBP11.45□□□□□ -0.58
COL3A1-202ENST00000317840 HAS1Q92839 578 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 CELF4Q9BZC1 486 aaKnown RBP11.45□□□□□ -0.58
COL3A1-202ENST00000317840 PDGFDQ9GZP0 370 aaPredicted RBP11.45□□□□□ -0.58
COL3A1-202ENST00000317840 ECM29Q5VYK3 1845 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 SHOX2O60902 331 aaPredicted RBP11.45□□□□□ -0.58
COL3A1-202ENST00000317840 PPP4R3AQ6IN85 833 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 PODNQ7Z5L7 613 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 NAGPAQ9UK23 515 aa11.45□□□□□ -0.58
COL3A1-202ENST00000317840 TTI1O43156 1089 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 NOL4O94818 638 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 NR3C1P04150 777 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 HSD17B3P37058 310 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 ZNF211Q13398 564 aaPredicted RBP11.44□□□□□ -0.58
COL3A1-202ENST00000317840 MTMR3Q13615 1198 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 CUL1Q13616 776 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 GLYCTKQ8IVS8 523 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 ZFPM1Q8IX07 1006 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 METTL13Q8N6R0 699 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 SYN2Q92777 582 aaPredicted RBP11.44□□□□□ -0.58
COL3A1-202ENST00000317840 JPH2Q9BR39 696 aaPredicted RBP11.44□□□□□ -0.58
COL3A1-202ENST00000317840 GDF3Q9NR23 364 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 SORBS3O60504 671 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 MED24O75448 989 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 MYBP10242 640 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 SMARCA1P28370 1054 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 PLTPP55058 493 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 MAGOHP61326 146 aaKnown RBP11.44□□□□□ -0.58
COL3A1-202ENST00000317840 ERVK-9P63128 1117 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 SLC15A2Q16348 729 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 MCTP2Q6DN12 878 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 IQCKQ8N0W5 287 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 MAGOHBQ96A72 148 aaKnown RBP11.44□□□□□ -0.58
COL3A1-202ENST00000317840 SH3GL2Q99962 352 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.44□□□□□ -0.58
COL3A1-202ENST00000317840 REEP2Q9BRK0 252 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 METTL14Q9HCE5 456 aaKnown RBP11.44□□□□□ -0.58
COL3A1-202ENST00000317840 CTTNBP2NLQ9P2B4 639 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 FRMD4BQ9Y2L6 1034 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 RABGAP1Q9Y3P9 1069 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 LCA5LO95447 670 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 ITGA4P13612 1032 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 EEF2P13639 858 aaKnown RBP11.44□□□□□ -0.58
COL3A1-202ENST00000317840 HNRNPH1P31943 449 aaKnown RBP11.44□□□□□ -0.58
COL3A1-202ENST00000317840 USP11P51784 963 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 CASP5P51878 434 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 PSMC6P62333 389 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 ARHGAP4P98171 946 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 TMEM119Q4V9L6 283 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 PPP4R3CPQ6ZMV5 832 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 GIMAP7Q8NHV1 300 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 PI4KBQ9UBF8 816 aa11.44□□□□□ -0.58
COL3A1-202ENST00000317840 RSPH10B2B2RC85 870 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 EXOC3O60645 756 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 RSPH10BP0C881 870 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 COPB2P35606 906 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 CASP4P49662 377 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 PTGISQ16647 500 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 PRAMEF18Q5VWM3 479 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 KDM7AQ6ZMT4 941 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 SPATS2Q86XZ4 545 aaKnown RBP11.43□□□□□ -0.58
COL3A1-202ENST00000317840 FAM186BQ8IYM0 893 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 CACNA2D3Q8IZS8 1091 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 INPP4AQ96PE3 977 aaPredicted RBP11.43□□□□□ -0.58
COL3A1-202ENST00000317840 RGL1Q9NZL6 768 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 COL14A1Q05707 1796 aaKnown RBP11.43□□□□□ -0.58
COL3A1-202ENST00000317840 CCDC172P0C7W6 258 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 TAL1P17542 331 aaPredicted RBP11.43□□□□□ -0.58
COL3A1-202ENST00000317840 CTTNQ14247 550 aaKnown RBP11.43□□□□□ -0.58
COL3A1-202ENST00000317840 ASTE1Q2TB18 679 aaPredicted RBP11.43□□□□□ -0.58
COL3A1-202ENST00000317840 C10orf76Q5T2E6 689 aa11.43□□□□□ -0.58
COL3A1-202ENST00000317840 CC2D2BQ6DHV5 1058 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms