RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 C7orf31Q8N865 590 aa20.28■□□□□ 0.84
HMGA1-201ENST00000311487 CEP170P1Q96L14 293 aa20.28■□□□□ 0.84
HMGA1-201ENST00000311487 BLOC1S4Q9NUP1 217 aa20.28■□□□□ 0.84
HMGA1-201ENST00000311487 SERTAD1Q9UHV2 236 aa20.28■□□□□ 0.84
HMGA1-201ENST00000311487 DNM3Q9UQ16 869 aa20.28■□□□□ 0.84
HMGA1-201ENST00000311487 NPHP3-ACAD11A0A0J9YXS1 232 aa20.27■□□□□ 0.84
HMGA1-201ENST00000311487 SYKP43405 635 aa20.27■□□□□ 0.84
HMGA1-201ENST00000311487 UBE2HP62256 183 aa20.27■□□□□ 0.84
HMGA1-201ENST00000311487 ITGA7Q13683 1181 aa20.27■□□□□ 0.84
HMGA1-201ENST00000311487 L1TD1Q5T7N2 865 aaKnown RBP20.27■□□□□ 0.84
HMGA1-201ENST00000311487 GPT2Q8TD30 523 aa20.27■□□□□ 0.84
HMGA1-201ENST00000311487 ATP8B4Q8TF62 1192 aa20.27■□□□□ 0.84
HMGA1-201ENST00000311487 NACC1Q96RE7 527 aa20.27■□□□□ 0.84
HMGA1-201ENST00000311487 PHF24Q9UPV7 400 aa20.27■□□□□ 0.84
HMGA1-201ENST00000311487 MOXD2PA6NHM9 499 aa20.27■□□□□ 0.84
HMGA1-201ENST00000311487 ZBTB42B2RXF5 422 aa20.27■□□□□ 0.84
HMGA1-201ENST00000311487 CACNB1Q02641 598 aaPredicted RBP20.27■□□□□ 0.84
HMGA1-201ENST00000311487 PPFIA1Q13136 1202 aa20.27■□□□□ 0.84
HMGA1-201ENST00000311487 SNW1Q13573 536 aaKnown RBP20.27■□□□□ 0.84
HMGA1-201ENST00000311487 XKR3Q5GH77 459 aa20.27■□□□□ 0.84
HMGA1-201ENST00000311487 HPSEQ9Y251 543 aa20.27■□□□□ 0.84
HMGA1-201ENST00000311487 KDM3AQ9Y4C1 1321 aa20.26■□□□□ 0.83
HMGA1-201ENST00000311487 HAS3O00219 553 aa20.26■□□□□ 0.83
HMGA1-201ENST00000311487 ZNF202O95125 648 aa20.26■□□□□ 0.83
HMGA1-201ENST00000311487 AFMP43652 599 aa20.26■□□□□ 0.83
HMGA1-201ENST00000311487 E2F4Q16254 413 aa20.26■□□□□ 0.83
HMGA1-201ENST00000311487 NEK9Q8TD19 979 aa20.26■□□□□ 0.83
HMGA1-201ENST00000311487 BBXQ8WY36 941 aaPredicted RBP20.26■□□□□ 0.83
HMGA1-201ENST00000311487 ERCC4Q92889 916 aaPredicted RBP20.26■□□□□ 0.83
HMGA1-201ENST00000311487 CCDC43Q96MW1 224 aaKnown RBP20.26■□□□□ 0.83
HMGA1-201ENST00000311487 TSEN34Q9BSV6 310 aaKnown RBP20.26■□□□□ 0.83
HMGA1-201ENST00000311487 NT5C3AQ9H0P0 336 aa20.26■□□□□ 0.83
HMGA1-201ENST00000311487 NRBP2Q9NSY0 501 aa20.26■□□□□ 0.83
HMGA1-201ENST00000311487 TRMT13Q9NUP7 481 aaKnown RBP20.26■□□□□ 0.83
HMGA1-201ENST00000311487 KPNA6O60684 536 aa20.25■□□□□ 0.83
HMGA1-201ENST00000311487 USO1O60763 962 aaKnown RBP20.25■□□□□ 0.83
HMGA1-201ENST00000311487 PLA2G4BP0C869 781 aa20.25■□□□□ 0.83
HMGA1-201ENST00000311487 RARRES1P49788 294 aa20.25■□□□□ 0.83
HMGA1-201ENST00000311487 GRIK4Q16099 956 aa20.25■□□□□ 0.83
HMGA1-201ENST00000311487 HYIQ5T013 277 aa20.25■□□□□ 0.83
HMGA1-201ENST00000311487 CCDC73Q6ZRK6 1079 aa20.25■□□□□ 0.83
HMGA1-201ENST00000311487 LMBR1Q8WVP7 490 aa20.25■□□□□ 0.83
HMGA1-201ENST00000311487 RAD54LQ92698 747 aa20.25■□□□□ 0.83
HMGA1-201ENST00000311487 SUGCTQ9HAC7 445 aa20.25■□□□□ 0.83
HMGA1-201ENST00000311487 CYP26B1Q9NR63 512 aa20.25■□□□□ 0.83
HMGA1-201ENST00000311487 MARCH8Q5T0T0 291 aa20.25■□□□□ 0.83
HMGA1-201ENST00000311487 GDF6Q6KF10 455 aaPredicted RBP20.25■□□□□ 0.83
HMGA1-201ENST00000311487 FMR1NBQ8N0W7 255 aaPredicted RBP20.25■□□□□ 0.83
HMGA1-201ENST00000311487 LRRC71Q8N4P6 559 aa20.25■□□□□ 0.83
HMGA1-201ENST00000311487 ZNF668Q96K58 619 aaPredicted RBP20.25■□□□□ 0.83
HMGA1-201ENST00000311487 PPP1R16BQ96T49 567 aa20.25■□□□□ 0.83
HMGA1-201ENST00000311487 RUSC1Q9BVN2 902 aa20.25■□□□□ 0.83
HMGA1-201ENST00000311487 KATNAL1Q9BW62 490 aa20.25■□□□□ 0.83
HMGA1-201ENST00000311487 DACT1Q9NYF0 836 aa20.25■□□□□ 0.83
HMGA1-201ENST00000311487 TREHO43280 583 aa20.24■□□□□ 0.83
HMGA1-201ENST00000311487 OTUD6AQ7L8S5 288 aa20.24■□□□□ 0.83
HMGA1-201ENST00000311487 METTL13Q8N6R0 699 aa20.24■□□□□ 0.83
HMGA1-201ENST00000311487 ENGASEQ8NFI3 743 aa20.24■□□□□ 0.83
HMGA1-201ENST00000311487 LARP4BQ92615 738 aaKnown RBP20.24■□□□□ 0.83
HMGA1-201ENST00000311487 MTRQ99707 1265 aa20.24■□□□□ 0.83
HMGA1-201ENST00000311487 TRPV6Q9H1D0 765 aa20.24■□□□□ 0.83
HMGA1-201ENST00000311487 BLZF1Q9H2G9 400 aa20.24■□□□□ 0.83
HMGA1-201ENST00000311487 STK24Q9Y6E0 443 aa20.24■□□□□ 0.83
HMGA1-201ENST00000311487 TRIP12Q14669 1992 aaPredicted RBP20.24■□□□□ 0.83
HMGA1-201ENST00000311487 ARHGEF35A5YM69 484 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 HBP1O60381 514 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 KLRC1P26715 233 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 SLC26A2P50443 739 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 DRP2Q13474 957 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 CAMK4Q16566 473 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 CAVIN1Q6NZI2 390 aaKnown RBP20.23■□□□□ 0.83
HMGA1-201ENST00000311487 DYMQ7RTS9 669 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 IQUBQ8NA54 791 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 GPRC5CQ9NQ84 441 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 SCN10AQ9Y5Y9 1956 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 SFI1A8K8P3 1242 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 ACTN4O43707 911 aaKnown RBP20.23■□□□□ 0.83
HMGA1-201ENST00000311487 PQBP1O60828 265 aaKnown RBP20.23■□□□□ 0.83
HMGA1-201ENST00000311487 LYPLA2O95372 231 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 EYA4O95677 639 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 SLC12A3P55017 1021 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 FAM160A1Q05DH4 1040 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 PADI6Q6TGC4 694 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 TMEM143Q96AN5 459 aa20.23■□□□□ 0.83
HMGA1-201ENST00000311487 NIFKQ9BYG3 293 aaKnown RBP20.23■□□□□ 0.83
HMGA1-201ENST00000311487 C17orf102A2RUQ5 167 aa20.22■□□□□ 0.83
HMGA1-201ENST00000311487 DKC1O60832 514 aaKnown RBP eCLIP20.22■□□□□ 0.83
HMGA1-201ENST00000311487 TMEM62Q0P6H9 643 aa20.22■□□□□ 0.83
HMGA1-201ENST00000311487 RUFY4Q6ZNE9 571 aa20.22■□□□□ 0.83
HMGA1-201ENST00000311487 GPBP1Q86WP2 473 aa20.22■□□□□ 0.83
HMGA1-201ENST00000311487 GAS2L3Q86XJ1 694 aa20.22■□□□□ 0.83
HMGA1-201ENST00000311487 CNNM3Q8NE01 707 aa20.22■□□□□ 0.83
HMGA1-201ENST00000311487 FAM167AQ96KS9 214 aa20.22■□□□□ 0.83
HMGA1-201ENST00000311487 CEP89Q96ST8 783 aa20.22■□□□□ 0.83
HMGA1-201ENST00000311487 FAM49AQ9H0Q0 323 aaPredicted RBP20.22■□□□□ 0.83
HMGA1-201ENST00000311487 C11orf49Q9H6J7 331 aa20.22■□□□□ 0.83
HMGA1-201ENST00000311487 CABYRO75952 493 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 MBD3O95983 291 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 CLCN3P51790 818 aa20.21■□□□□ 0.83
HMGA1-201ENST00000311487 POLGP54098 1239 aaPredicted RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms