RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SLC16A3O15427 465 aaKnown RBP6.9□□□□□ -1.31
VPS35-201ENST00000299138 TOM1O60784 492 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 KRT8P05787 483 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 MCF2P10911 925 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 PHBP35232 272 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 STX17P56962 302 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 MRPS35P82673 323 aaKnown RBP6.9□□□□□ -1.31
VPS35-201ENST00000299138 NFRKBQ6P4R8 1299 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 CCT8L2Q96SF2 557 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 VPS37BQ9H9H4 285 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 PCDHGC5Q9Y5F6 944 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 PITPNM2Q9BZ72 1349 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 CALUO43852 315 aaPredicted RBP6.9□□□□□ -1.31
VPS35-201ENST00000299138 CAPN1P07384 714 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 SCP2P22307 547 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 KLHL30Q0D2K2 578 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 WLSQ5T9L3 541 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 DENND2CQ68D51 928 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 CABP7Q86V35 215 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 ZNF507Q8TCN5 953 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 CLIC6Q96NY7 704 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 CARD9Q9H257 536 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 RHBDL2Q9NX52 303 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.9□□□□□ -1.31
VPS35-201ENST00000299138 TNS3Q68CZ2 1445 aa6.9□□□□□ -1.31
VPS35-201ENST00000299138 C1orf167Q5SNV9 1468 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 GSTA2P09210 222 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 PSMD7P51665 324 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 RWDD2BP57060 319 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 CMPK2Q5EBM0 449 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 CEP78Q5JTW2 689 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 NAA35Q5VZE5 725 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 MYCBPAPQ8TBZ2 947 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 PPP4R1Q8TF05 950 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 OPTNQ96CV9 577 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 RRP36Q96EU6 259 aaKnown RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 DACH2Q96NX9 599 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 FAM167BQ9BTA0 163 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 STRIP2Q9ULQ0 834 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 PEAK1Q9H792 1746 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 SYNGAP1Q96PV0 1343 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 KIF1AQ12756 1690 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 GAP43P17677 238 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 MUTP22033 750 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 CCT6AP40227 531 aaKnown RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 SNX1Q13596 522 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 CENPPQ6IPU0 288 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 NEK8Q86SG6 692 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 ZC3H18Q86VM9 953 aaKnown RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 COL23A1Q86Y22 540 aaPredicted RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 AHI1Q8N157 1196 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 SIX5Q8N196 739 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 CYTH2Q99418 400 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 MKNK1Q9BUB5 465 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 AIPL1Q9NZN9 384 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 AMFRQ9UKV5 643 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 ACTL7BQ9Y614 415 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 V9GY48 417 aaPredicted RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 FAM170AA1A519 330 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 IRS4O14654 1257 aaPredicted RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 ITGA6P23229 1130 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 CHRNA3P32297 505 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 RAPGEF1Q13905 1077 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 SLC18A3Q16572 532 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 OLFML2BQ68BL8 750 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 CASC4Q6P4E1 433 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 MOXD1Q6UVY6 613 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 ZNF473Q8WTR7 871 aaKnown RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 SNRNP27Q8WVK2 155 aaKnown RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 RAPGEF5Q92565 580 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 TRIM11Q96F44 468 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.89□□□□□ -1.314e-6■■■□□ 14.6
VPS35-201ENST00000299138 SUCLA2Q9P2R7 463 aaPredicted RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 PCDHB6Q9Y5E3 794 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 LRRIQ3A6PVS8 624 aaPredicted RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 ATP5J2-PTCD1G3V325 749 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 TRIM66O15016 1216 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 KCNQ3O43525 872 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 FAM13AO94988 1023 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 CYP7A1P22680 504 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 XRCC4Q13426 336 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 ADCK1Q86TW2 530 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 PACS2Q86VP3 889 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 NOA1Q8NC60 698 aaKnown RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 IFT122Q9HBG6 1241 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 LRWD1Q9UFC0 647 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 ZBTB21Q9ULJ3 1066 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 UBE4BO95155 1302 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 FMN2Q9NZ56 1722 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 RGS16O15492 202 aaPredicted RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 TEX33O43247 280 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 RANBP6O60518 1105 aaKnown RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 ARHGEF18Q6ZSZ5 1173 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 APTXQ7Z2E3 356 aaKnown RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 SESTD1Q86VW0 696 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 TBC1D10CQ8IV04 446 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 CCDC13Q8IYE1 715 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 DCLK2Q8N568 766 aa6.89□□□□□ -1.31
VPS35-201ENST00000299138 JARID2Q92833 1246 aaPredicted RBP6.89□□□□□ -1.31
VPS35-201ENST00000299138 NDUFA13Q9P0J0 144 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms