RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 NIPA1Q7RTP0 329 aa26.29■■□□□ 1.8
TRIM54-201ENST00000296098 GBP3Q9H0R5 595 aa26.29■■□□□ 1.8
TRIM54-201ENST00000296098 GINM1Q9NU53 330 aa26.29■■□□□ 1.8
TRIM54-201ENST00000296098 ACTN1P12814 892 aa26.29■■□□□ 1.8
TRIM54-201ENST00000296098 KLHL30Q0D2K2 578 aa26.29■■□□□ 1.8
TRIM54-201ENST00000296098 BEND6Q5SZJ8 279 aaPredicted RBP26.29■■□□□ 1.8
TRIM54-201ENST00000296098 DPY19L2P1Q6NXN4 242 aa26.29■■□□□ 1.8
TRIM54-201ENST00000296098 BANK1Q8NDB2 785 aa26.29■■□□□ 1.8
TRIM54-201ENST00000296098 IL31RAQ8NI17 732 aa26.29■■□□□ 1.8
TRIM54-201ENST00000296098 SLC35C1Q96A29 364 aa26.29■■□□□ 1.8
TRIM54-201ENST00000296098 ARHGEF35A5YM69 484 aa26.28■■□□□ 1.8
TRIM54-201ENST00000296098 DDX39AO00148 427 aaKnown RBP26.28■■□□□ 1.8
TRIM54-201ENST00000296098 ZNF185O15231 689 aa26.28■■□□□ 1.8
TRIM54-201ENST00000296098 EGFRP00533 1210 aa26.28■■□□□ 1.8
TRIM54-201ENST00000296098 SLC9A1P19634 815 aa26.28■■□□□ 1.8
TRIM54-201ENST00000296098 RPS12P25398 132 aaKnown RBP26.28■■□□□ 1.8
TRIM54-201ENST00000296098 USP14P54578 494 aa26.28■■□□□ 1.8
TRIM54-201ENST00000296098 SLC18A3Q16572 532 aa26.28■■□□□ 1.8
TRIM54-201ENST00000296098 ZC2HC1CQ53FD0 456 aaPredicted RBP26.28■■□□□ 1.8
TRIM54-201ENST00000296098 FAM178BQ8IXR5 827 aa26.28■■□□□ 1.8
TRIM54-201ENST00000296098 DRC1Q96MC2 740 aa26.28■■□□□ 1.8
TRIM54-201ENST00000296098 NOX5Q96PH1 765 aa26.28■■□□□ 1.8
TRIM54-201ENST00000296098 KCNH7Q9NS40 1196 aa26.28■■□□□ 1.8
TRIM54-201ENST00000296098 ALAS1P13196 640 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 UCHL3P15374 230 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 GUCY2CP25092 1073 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 PON1P27169 355 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 ARID5AQ03989 594 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 KLHDC7AQ5VTJ3 777 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 IQCEQ6IPM2 695 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 WDR93Q6P2C0 686 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 MIER3Q7Z3K6 550 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 CPXCR1Q8N123 301 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 RNF10Q8N5U6 811 aaKnown RBP26.27■■□□□ 1.8
TRIM54-201ENST00000296098 FIZ1Q96SL8 496 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 SLC38A10Q9HBR0 1119 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 CTNND1O60716 968 aaKnown RBP26.27■■□□□ 1.8
TRIM54-201ENST00000296098 UTP14CQ5TAP6 766 aaKnown RBP26.27■■□□□ 1.8
TRIM54-201ENST00000296098 GBP6Q6ZN66 633 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 RAVER2Q9HCJ3 691 aaKnown RBP26.27■■□□□ 1.8
TRIM54-201ENST00000296098 PKD2L1Q9P0L9 805 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 SALL4Q9UJQ4 1053 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 PCDHB13Q9Y5F0 798 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 MYH11P35749 1972 aa26.27■■□□□ 1.8
TRIM54-201ENST00000296098 PPP1R12BO60237 982 aaPredicted RBP26.26■■□□□ 1.79
TRIM54-201ENST00000296098 PRLRP16471 622 aa26.26■■□□□ 1.79
TRIM54-201ENST00000296098 ODR4Q5SWX8 454 aa26.26■■□□□ 1.79
TRIM54-201ENST00000296098 PCNX4Q63HM2 1172 aa26.26■■□□□ 1.79
TRIM54-201ENST00000296098 ZNF720Q7Z2F6 126 aa26.26■■□□□ 1.79
TRIM54-201ENST00000296098 FAM186BQ8IYM0 893 aa26.26■■□□□ 1.79
TRIM54-201ENST00000296098 ANKRD13CQ8N6S4 541 aa26.26■■□□□ 1.79
TRIM54-201ENST00000296098 SPAG5Q96R06 1193 aa26.26■■□□□ 1.79
TRIM54-201ENST00000296098 UBXN6Q9BZV1 441 aa26.26■■□□□ 1.79
TRIM54-201ENST00000296098 ABCB6Q9NP58 842 aa26.26■■□□□ 1.79
TRIM54-201ENST00000296098 HYOU1Q9Y4L1 999 aa26.26■■□□□ 1.79
TRIM54-201ENST00000296098 NFKBIEO00221 500 aa26.26■■□□□ 1.79
TRIM54-201ENST00000296098 PDE2AO00408 941 aaPredicted RBP26.26■■□□□ 1.79
TRIM54-201ENST00000296098 PSMC2P35998 433 aaKnown RBP26.26■■□□□ 1.79
TRIM54-201ENST00000296098 DGKZQ13574 1117 aa26.26■■□□□ 1.79
TRIM54-201ENST00000296098 BORCS6Q96GS4 357 aa26.26■■□□□ 1.79
TRIM54-201ENST00000296098 UBIAD1Q9Y5Z9 338 aa26.26■■□□□ 1.79
TRIM54-201ENST00000296098 DOCK1Q14185 1865 aa26.25■■□□□ 1.79
TRIM54-201ENST00000296098 MAP2K7O14733 419 aa26.25■■□□□ 1.79
TRIM54-201ENST00000296098 FLOT1O75955 427 aa26.25■■□□□ 1.79
TRIM54-201ENST00000296098 TKFCQ3LXA3 575 aa26.25■■□□□ 1.79
TRIM54-201ENST00000296098 HS2ST1Q7LGA3 356 aa26.25■■□□□ 1.79
TRIM54-201ENST00000296098 MKNK1Q9BUB5 465 aa26.25■■□□□ 1.79
TRIM54-201ENST00000296098 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP26.25■■□□□ 1.79
TRIM54-201ENST00000296098 IKZF4Q9H2S9 585 aa26.25■■□□□ 1.79
TRIM54-201ENST00000296098 HOMER2Q9NSB8 354 aa26.25■■□□□ 1.79
TRIM54-201ENST00000296098 RNF216Q9NWF9 866 aaPredicted RBP26.25■■□□□ 1.79
TRIM54-201ENST00000296098 GCNT4Q9P109 453 aa26.25■■□□□ 1.79
TRIM54-201ENST00000296098 GTPBP10A4D1E9 387 aaKnown RBP26.24■■□□□ 1.79
TRIM54-201ENST00000296098 TCP1P17987 556 aaKnown RBP26.24■■□□□ 1.79
TRIM54-201ENST00000296098 ENOX2Q16206 610 aaKnown RBP26.24■■□□□ 1.79
TRIM54-201ENST00000296098 MUM1L1Q5H9M0 696 aa26.24■■□□□ 1.79
TRIM54-201ENST00000296098 SYTL5Q8TDW5 730 aaPredicted RBP26.24■■□□□ 1.79
TRIM54-201ENST00000296098 AGO4Q9HCK5 861 aaKnown RBP26.24■■□□□ 1.79
TRIM54-201ENST00000296098 FBXL5Q9UKA1 691 aa26.24■■□□□ 1.79
TRIM54-201ENST00000296098 PPP1R9AQ9ULJ8 1098 aa26.24■■□□□ 1.79
TRIM54-201ENST00000296098 A0A087X0T9 212 aa26.24■■□□□ 1.79
TRIM54-201ENST00000296098 HIP1RO75146 1068 aa26.24■■□□□ 1.79
TRIM54-201ENST00000296098 ZBTB7AO95365 584 aa26.24■■□□□ 1.79
TRIM54-201ENST00000296098 P4HBP07237 508 aaKnown RBP26.24■■□□□ 1.79
TRIM54-201ENST00000296098 FAM228BP0C875 321 aa26.24■■□□□ 1.79
TRIM54-201ENST00000296098 VCAM1P19320 739 aa26.24■■□□□ 1.79
TRIM54-201ENST00000296098 MCM3P25205 808 aa26.24■■□□□ 1.79
TRIM54-201ENST00000296098 MTMR2Q13614 643 aa26.24■■□□□ 1.79
TRIM54-201ENST00000296098 HDXQ7Z353 690 aa26.24■■□□□ 1.79
TRIM54-201ENST00000296098 KSR1Q8IVT5 923 aa26.24■■□□□ 1.79
TRIM54-201ENST00000296098 OSBPL9Q96SU4 736 aa26.24■■□□□ 1.79
TRIM54-201ENST00000296098 SIX2Q9NPC8 291 aa26.24■■□□□ 1.79
TRIM54-201ENST00000296098 MAP3K20Q9NYL2 800 aaKnown RBP26.24■■□□□ 1.79
TRIM54-201ENST00000296098 TARSL2A2RTX5 802 aaKnown RBP26.23■■□□□ 1.79
TRIM54-201ENST00000296098 DHX15O43143 795 aaKnown RBP26.23■■□□□ 1.79
TRIM54-201ENST00000296098 BUB1O43683 1085 aa26.23■■□□□ 1.79
TRIM54-201ENST00000296098 MAPK7Q13164 816 aa26.23■■□□□ 1.79
TRIM54-201ENST00000296098 ITGB3BPQ13352 177 aaPredicted RBP26.23■■□□□ 1.79
TRIM54-201ENST00000296098 TERF2Q15554 542 aa26.23■■□□□ 1.79
TRIM54-201ENST00000296098 ZNF572Q7Z3I7 529 aaPredicted RBP26.23■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms