RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 IL17RAQ96F46 866 aa11.05□□□□□ -0.64
VPS41-201ENST00000265745 SLC26A6Q9BXS9 759 aa11.05□□□□□ -0.64
VPS41-201ENST00000265745 NCOA5Q9HCD5 579 aaKnown RBP11.05□□□□□ -0.64
VPS41-201ENST00000265745 TBC1D22BQ9NU19 505 aa11.05□□□□□ -0.64
VPS41-201ENST00000265745 SQORQ9Y6N5 450 aa11.05□□□□□ -0.64
VPS41-201ENST00000265745 MUC3AQ02505 3323 aa11.05□□□□□ -0.64
VPS41-201ENST00000265745 MYH6P13533 1939 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 SMIM35A0A1B0GVV1 85 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 HAX1O00165 279 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 BACH1O14867 736 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 EDIL3O43854 480 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 HBP1O60381 514 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 ATP4AP20648 1035 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 FECHP22830 423 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 KLRC1P26715 233 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 CD52P31358 61 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 KCNQ1P51787 676 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 PRR16Q569H4 304 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 FAM160B1Q5W0V3 765 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 ZNF746Q6NUN9 644 aaPredicted RBP11.04□□□□□ -0.64
VPS41-201ENST00000265745 MIS18BP1Q6P0N0 1132 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 TSHZ1Q6ZSZ6 1077 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 RTN4RL1Q86UN2 441 aaPredicted RBP11.04□□□□□ -0.64
VPS41-201ENST00000265745 CCDC60Q8IWA6 550 aaPredicted RBP11.04□□□□□ -0.64
VPS41-201ENST00000265745 RASGRP4Q8TDF6 673 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 LENG9Q96B70 501 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 ZNF274Q96GC6 653 aaPredicted RBP11.04□□□□□ -0.64
VPS41-201ENST00000265745 SAMD11Q96NU1 681 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 UIMC1Q96RL1 719 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 UHRF1Q96T88 793 aaPredicted RBP11.04□□□□□ -0.64
VPS41-201ENST00000265745 ZNF577Q9BSK1 485 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 CELF4Q9BZC1 486 aaKnown RBP11.04□□□□□ -0.64
VPS41-201ENST00000265745 TM6SF1Q9BZW5 370 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 ZMYND15Q9H091 742 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 ZNF302Q9NR11 478 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 SH3GLB2Q9NR46 395 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 VPS54Q9P1Q0 977 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 CYP46A1Q9Y6A2 500 aa11.04□□□□□ -0.64
VPS41-201ENST00000265745 TRIP12Q14669 1992 aaPredicted RBP11.03□□□□□ -0.64
VPS41-201ENST00000265745 ZBTB42B2RXF5 422 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 H3BNC9 293 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 M0QZ92 97 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 USP11P51784 963 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 SETQ01105 290 aaPredicted RBP11.03□□□□□ -0.64
VPS41-201ENST00000265745 TMEM62Q0P6H9 643 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 ZNF484Q5JVG2 852 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 PDXDC2PQ6P474 469 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 PARP9Q8IXQ6 854 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 TMEM192Q8IY95 271 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 KIAA0319LQ8IZA0 1049 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 CRIPAKQ8N1N5 446 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 FIBCD1Q8N539 461 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 CCDC148Q8NFR7 591 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 LINC01599Q8WXQ3 324 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 MRPL38Q96DV4 380 aaKnown RBP11.03□□□□□ -0.64
VPS41-201ENST00000265745 UPF3BQ9BZI7 483 aaKnown RBP11.03□□□□□ -0.64
VPS41-201ENST00000265745 RC3H2Q9HBD1 1191 aaKnown RBP11.03□□□□□ -0.64
VPS41-201ENST00000265745 PADI3Q9ULW8 664 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 PCDHA10Q9Y5I2 948 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 MAFBQ9Y5Q3 323 aaPredicted RBP11.03□□□□□ -0.64
VPS41-201ENST00000265745 TRPV2Q9Y5S1 764 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 IGSF9BQ9UPX0 1349 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 KDM3AQ9Y4C1 1321 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 XIRP2A4UGR9 3374 aa11.03□□□□□ -0.64
VPS41-201ENST00000265745 TANC1Q9C0D5 1861 aa11.02□□□□□ -0.64
VPS41-201ENST00000265745 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.02□□□□□ -0.65
VPS41-201ENST00000265745 DGKIO75912 1065 aa11.02□□□□□ -0.65
VPS41-201ENST00000265745 LINC00271P0C7V0 271 aa11.02□□□□□ -0.65
VPS41-201ENST00000265745 BMPR1AP36894 532 aa11.02□□□□□ -0.65
VPS41-201ENST00000265745 NLRP5P59047 1200 aa11.02□□□□□ -0.65
VPS41-201ENST00000265745 KRT76Q01546 638 aa11.02□□□□□ -0.65
VPS41-201ENST00000265745 SSRP1Q08945 709 aaKnown RBP11.02□□□□□ -0.65
VPS41-201ENST00000265745 PTPROQ16827 1216 aa11.02□□□□□ -0.65
VPS41-201ENST00000265745 FAM43BQ6ZT52 329 aaPredicted RBP11.02□□□□□ -0.65
VPS41-201ENST00000265745 SMAP1Q8IYB5 467 aaPredicted RBP11.02□□□□□ -0.65
VPS41-201ENST00000265745 TRIM22Q8IYM9 498 aa11.02□□□□□ -0.65
VPS41-201ENST00000265745 ZNF689Q96CS4 500 aaPredicted RBP11.02□□□□□ -0.65
VPS41-201ENST00000265745 NECAB3Q96P71 396 aaPredicted RBP11.02□□□□□ -0.65
VPS41-201ENST00000265745 FTHL17Q9BXU8 183 aa11.02□□□□□ -0.65
VPS41-201ENST00000265745 CDHR5Q9HBB8 845 aa11.02□□□□□ -0.65
VPS41-201ENST00000265745 TRANK1O15050 2925 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 C5orf67F2Z3F1 127 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 M0R2N6 131 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 CPLX1O14810 134 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 MSH4O15457 936 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 C22orf31O95567 290 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 RB1P06400 928 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 NEFLP07196 543 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 PSAPP07602 524 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 PAK2Q13177 524 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 GPM6BQ13491 265 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 CKAP2LQ8IYA6 745 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 CLP1Q92989 425 aaKnown RBP11.01□□□□□ -0.65
VPS41-201ENST00000265745 RIT2Q99578 217 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 TMX1Q9H3N1 280 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 PDRG1Q9NUG6 133 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 GABBR1Q9UBS5 961 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 PCDHA4Q9UN74 947 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 GINS2Q9Y248 185 aa11.01□□□□□ -0.65
VPS41-201ENST00000265745 MYH7BA7E2Y1 1941 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 152.8 ms