RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 TRIP12Q14669 1992 aaPredicted RBP18.77■□□□□ 0.6
SDCBP-201ENST00000260130 RSPH10B2B2RC85 870 aa18.77■□□□□ 0.6
SDCBP-201ENST00000260130 RSPH10BP0C881 870 aa18.77■□□□□ 0.6
SDCBP-201ENST00000260130 ACRP10323 421 aa18.77■□□□□ 0.6
SDCBP-201ENST00000260130 RESTQ13127 1097 aa18.77■□□□□ 0.6
SDCBP-201ENST00000260130 TMEM266Q2M3C6 531 aa18.77■□□□□ 0.6
SDCBP-201ENST00000260130 TRAF7Q6Q0C0 670 aa18.77■□□□□ 0.6
SDCBP-201ENST00000260130 DNAJB3Q8WWF6 145 aa18.77■□□□□ 0.6
SDCBP-201ENST00000260130 LXNQ9BS40 222 aa18.77■□□□□ 0.6
SDCBP-201ENST00000260130 ZSWIM4Q9H7M6 989 aa18.77■□□□□ 0.6
SDCBP-201ENST00000260130 WRAP73Q9P2S5 460 aaPredicted RBP18.77■□□□□ 0.6
SDCBP-201ENST00000260130 SEPT9Q9UHD8 586 aaPredicted RBP18.77■□□□□ 0.6
SDCBP-201ENST00000260130 SMIM35A0A1B0GVV1 85 aa18.76■□□□□ 0.59
SDCBP-201ENST00000260130 RPLP2P05387 115 aaKnown RBP18.76■□□□□ 0.59
SDCBP-201ENST00000260130 PRPHP41219 470 aa18.76■□□□□ 0.59
SDCBP-201ENST00000260130 FXR2P51116 673 aaKnown RBP eCLIP18.76■□□□□ 0.59
SDCBP-201ENST00000260130 CYP4A11Q02928 519 aa18.76■□□□□ 0.59
SDCBP-201ENST00000260130 CTTNQ14247 550 aaKnown RBP18.76■□□□□ 0.59
SDCBP-201ENST00000260130 SHHQ15465 462 aa18.76■□□□□ 0.59
SDCBP-201ENST00000260130 C9orf50Q5SZB4 431 aa18.76■□□□□ 0.59
SDCBP-201ENST00000260130 DEFB128Q7Z7B8 93 aa18.76■□□□□ 0.59
SDCBP-201ENST00000260130 TPH2Q8IWU9 490 aa18.76■□□□□ 0.59
SDCBP-201ENST00000260130 C4orf19Q8IY42 314 aa18.76■□□□□ 0.59
SDCBP-201ENST00000260130 NEK9Q8TD19 979 aa18.76■□□□□ 0.59
SDCBP-201ENST00000260130 PPP1R9BQ96SB3 815 aa18.76■□□□□ 0.59
SDCBP-201ENST00000260130 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.76■□□□□ 0.59
SDCBP-201ENST00000260130 ATP2C1P98194 919 aaPredicted RBP18.76■□□□□ 0.59
SDCBP-201ENST00000260130 ANO5Q75V66 913 aa18.76■□□□□ 0.59
SDCBP-201ENST00000260130 VWCEQ96DN2 955 aa18.76■□□□□ 0.59
SDCBP-201ENST00000260130 FAM49AQ9H0Q0 323 aaPredicted RBP18.76■□□□□ 0.59
SDCBP-201ENST00000260130 ZSCAN16Q9H4T2 348 aaPredicted RBP18.76■□□□□ 0.59
SDCBP-201ENST00000260130 MAGEB2O15479 319 aa18.75■□□□□ 0.59
SDCBP-201ENST00000260130 C22orf31O95567 290 aa18.75■□□□□ 0.59
SDCBP-201ENST00000260130 PFKMP08237 780 aa18.75■□□□□ 0.59
SDCBP-201ENST00000260130 PDIA5Q14554 519 aa18.75■□□□□ 0.59
SDCBP-201ENST00000260130 GPNMBQ14956 572 aa18.75■□□□□ 0.59
SDCBP-201ENST00000260130 TARBP2Q15633 366 aaKnown RBP18.75■□□□□ 0.59
SDCBP-201ENST00000260130 TMEM240Q5SV17 173 aa18.75■□□□□ 0.59
SDCBP-201ENST00000260130 PSRC1Q6PGN9 363 aaPredicted RBP18.75■□□□□ 0.59
SDCBP-201ENST00000260130 DTHD1Q6ZMT9 781 aa18.75■□□□□ 0.59
SDCBP-201ENST00000260130 ZNF365Q70YC5 407 aa18.75■□□□□ 0.59
SDCBP-201ENST00000260130 NAP1L5Q96NT1 182 aaPredicted RBP18.75■□□□□ 0.59
SDCBP-201ENST00000260130 KAT6AQ92794 2004 aa18.75■□□□□ 0.59
SDCBP-201ENST00000260130 TMEM150BA6NC51 233 aa18.75■□□□□ 0.59
SDCBP-201ENST00000260130 FGBP02675 491 aa18.75■□□□□ 0.59
SDCBP-201ENST00000260130 CTSHP09668 335 aa18.75■□□□□ 0.59
SDCBP-201ENST00000260130 MTERF2Q49AM1 385 aa18.75■□□□□ 0.59
SDCBP-201ENST00000260130 FAM26DQ5JW98 314 aa18.75■□□□□ 0.59
SDCBP-201ENST00000260130 NME8Q8N427 588 aa18.75■□□□□ 0.59
SDCBP-201ENST00000260130 RAB34Q9BZG1 259 aa18.75■□□□□ 0.59
SDCBP-201ENST00000260130 MYH9P35579 1960 aaKnown RBP18.74■□□□□ 0.59
SDCBP-201ENST00000260130 NBNO60934 754 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 NCLP19338 710 aaKnown RBP18.74■□□□□ 0.59
SDCBP-201ENST00000260130 YWHABP31946 246 aaKnown RBP18.74■□□□□ 0.59
SDCBP-201ENST00000260130 MBTPS1Q14703 1052 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 OTUD6AQ7L8S5 288 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 METTL13Q8N6R0 699 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 IGSF22Q8N9C0 903 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 ERMNQ8TAM6 284 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 FTOQ9C0B1 505 aaKnown RBP eCLIP18.74■□□□□ 0.595e-6■□□□□ 9.5
SDCBP-201ENST00000260130 LRWD1Q9UFC0 647 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 LAMA3Q16787 3333 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 LYPLA2O95372 231 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 TBC1D8BQ0IIM8 1120 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 PKP1Q13835 747 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 IL17AQ16552 155 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 HABP4Q5JVS0 413 aaKnown RBP18.74■□□□□ 0.59
SDCBP-201ENST00000260130 IER5Q5VY09 327 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 CAVIN1Q6NZI2 390 aaKnown RBP18.74■□□□□ 0.59
SDCBP-201ENST00000260130 FAM173BQ6P4H8 233 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 KIAA0319LQ8IZA0 1049 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 CEP89Q96ST8 783 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 SH2D3AQ9BRG2 576 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 TUFT1Q9NNX1 390 aa18.74■□□□□ 0.59
SDCBP-201ENST00000260130 BMP15O95972 392 aa18.73■□□□□ 0.59
SDCBP-201ENST00000260130 CHRNA1P02708 482 aa18.73■□□□□ 0.59
SDCBP-201ENST00000260130 CXCL10P02778 98 aa18.73■□□□□ 0.59
SDCBP-201ENST00000260130 SPATA31C1P0DKV0 1188 aa18.73■□□□□ 0.59
SDCBP-201ENST00000260130 SF3A1Q15459 793 aaKnown RBP18.73■□□□□ 0.59
SDCBP-201ENST00000260130 ZSCAN23Q3MJ62 389 aa18.73■□□□□ 0.59
SDCBP-201ENST00000260130 ARL6IP4Q66PJ3 421 aaKnown RBP18.73■□□□□ 0.59
SDCBP-201ENST00000260130 EFCAB12Q6NXP0 572 aa18.73■□□□□ 0.59
SDCBP-201ENST00000260130 CATSPER3Q86XQ3 398 aa18.73■□□□□ 0.59
SDCBP-201ENST00000260130 POLR3CQ9BUI4 534 aaPredicted RBP18.73■□□□□ 0.59
SDCBP-201ENST00000260130 CYP26B1Q9NR63 512 aa18.73■□□□□ 0.59
SDCBP-201ENST00000260130 ZBTB39O15060 712 aa18.72■□□□□ 0.59
SDCBP-201ENST00000260130 TMOD1P28289 359 aa18.72■□□□□ 0.59
SDCBP-201ENST00000260130 NPEPPSP55786 919 aa18.72■□□□□ 0.59
SDCBP-201ENST00000260130 MRPS6P82932 125 aaKnown RBP18.72■□□□□ 0.59
SDCBP-201ENST00000260130 MGAT3Q09327 533 aa18.72■□□□□ 0.59
SDCBP-201ENST00000260130 PLA2G4FQ68DD2 849 aa18.72■□□□□ 0.59
SDCBP-201ENST00000260130 OTOP2Q7RTS6 562 aa18.72■□□□□ 0.59
SDCBP-201ENST00000260130 CEP170P1Q96L14 293 aa18.72■□□□□ 0.59
SDCBP-201ENST00000260130 RNPC3Q96LT9 517 aaKnown RBP18.72■□□□□ 0.59
SDCBP-201ENST00000260130 MED24O75448 989 aa18.72■□□□□ 0.59
SDCBP-201ENST00000260130 RPA1P27694 616 aa18.72■□□□□ 0.59
SDCBP-201ENST00000260130 TMEM62Q0P6H9 643 aa18.72■□□□□ 0.59
SDCBP-201ENST00000260130 HERVK_113Q902F9 699 aa18.72■□□□□ 0.59
SDCBP-201ENST00000260130 SUGCTQ9HAC7 445 aa18.72■□□□□ 0.59
SDCBP-201ENST00000260130 PPME1Q9Y570 386 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms