RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 HNRNPLLQ8WVV9 542 aaKnown RBP11.19□□□□□ -0.62
VCL-201ENST00000211998 RAPGEF5Q92565 580 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 RNPC3Q96LT9 517 aaKnown RBP11.19□□□□□ -0.62
VCL-201ENST00000211998 XPO6Q96QU8 1125 aaKnown RBP11.19□□□□□ -0.62
VCL-201ENST00000211998 GINM1Q9NU53 330 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.19□□□□□ -0.62
VCL-201ENST00000211998 LRRIQ3A6PVS8 624 aaPredicted RBP11.19□□□□□ -0.62
VCL-201ENST00000211998 ZNF185O15231 689 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 APOA1P02647 267 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 NR2F2P24468 414 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 BTDP43251 543 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 LIG4P49917 911 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 ICA1Q05084 483 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 BBS9Q3SYG4 887 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 HP1BP3Q5SSJ5 553 aaPredicted RBP11.19□□□□□ -0.62
VCL-201ENST00000211998 FAM102BQ5T8I3 360 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 CENPUQ71F23 418 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 SLC17A8Q8NDX2 589 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 CYP4F11Q9HBI6 524 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 ANKFY1Q9P2R3 1169 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 COL4A3BPQ9Y5P4 624 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 TESPA1A2RU30 521 aaPredicted RBP11.19□□□□□ -0.62
VCL-201ENST00000211998 KLRF2D3W0D1 207 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 AP1G2O75843 785 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 CHRNDQ07001 517 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 RESP18Q5W5W9 173 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 ALKBH5Q6P6C2 394 aaKnown RBP11.19□□□□□ -0.62
VCL-201ENST00000211998 CCDC17Q96LX7 622 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 SH3GL2Q99962 352 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 ADPGKQ9BRR6 497 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 TRIM15Q9C019 465 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 CARD9Q9H257 536 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 COPRSQ9NQ92 184 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 ZNF521Q96K83 1311 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 KDM5DQ9BY66 1539 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 RNF103-CHMP3A0A140T963 221 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 MAGEA13PA6NCF6 341 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 IPO5O00410 1097 aaKnown RBP11.19□□□□□ -0.62
VCL-201ENST00000211998 GYG1P46976 350 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 TSPY1Q01534 308 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 CUL4BQ13620 913 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 CNGA3Q16281 694 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 ZNF589Q86UQ0 364 aaPredicted RBP11.19□□□□□ -0.62
VCL-201ENST00000211998 MCUQ8NE86 351 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 GJA10Q969M2 543 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 ATP11BQ9Y2G3 1177 aa11.19□□□□□ -0.62
VCL-201ENST00000211998 DIS3Q9Y2L1 958 aaKnown RBP11.19□□□□□ -0.62
VCL-201ENST00000211998 SRPRBQ9Y5M8 271 aaKnown RBP11.19□□□□□ -0.62
VCL-201ENST00000211998 COPEO14579 308 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 GSTA4O15217 222 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 DEAF1O75398 565 aaPredicted RBP11.18□□□□□ -0.62
VCL-201ENST00000211998 CYP2E1P05181 493 aaPredicted RBP11.18□□□□□ -0.62
VCL-201ENST00000211998 BASP1P80723 227 aaKnown RBP11.18□□□□□ -0.62
VCL-201ENST00000211998 MYL7Q01449 175 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 RFX6Q8HWS3 928 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 SIKE1Q9BRV8 207 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 CCDC90BQ9GZT6 254 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 ATP6V0A4Q9HBG4 840 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 C1orf112Q9NSG2 853 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 STX18Q9P2W9 335 aaKnown RBP11.18□□□□□ -0.62
VCL-201ENST00000211998 LEMD3Q9Y2U8 911 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 CLASP1Q7Z460 1538 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 CEP170Q5SW79 1584 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 LAD1O00515 517 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 ALAS1P13196 640 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 BYSLQ13895 437 aaKnown RBP11.18□□□□□ -0.62
VCL-201ENST00000211998 FSCBQ5H9T9 825 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 DPY19L2Q6NUT2 758 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 CASP10Q92851 521 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 SEPT10Q9P0V9 454 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 DDX25Q9UHL0 483 aaKnown RBP11.18□□□□□ -0.62
VCL-201ENST00000211998 XDHP47989 1333 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 HNRNPCL1O60812 293 aaKnown RBP11.18□□□□□ -0.62
VCL-201ENST00000211998 FMNL1O95466 1100 aaPredicted RBP11.18□□□□□ -0.62
VCL-201ENST00000211998 MAP4P27816 1152 aaKnown RBP11.18□□□□□ -0.62
VCL-201ENST00000211998 YARSP54577 528 aaKnown RBP11.18□□□□□ -0.62
VCL-201ENST00000211998 FKBP3Q00688 224 aaKnown RBP11.18□□□□□ -0.62
VCL-201ENST00000211998 BTKQ06187 659 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 GFPT1Q06210 699 aaPredicted RBP11.18□□□□□ -0.62
VCL-201ENST00000211998 DAB2IPQ5VWQ8 1189 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 APOA5Q6Q788 366 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 LRIG3Q6UXM1 1119 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 DPF2Q92785 391 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 CFAP36Q96G28 342 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 LCMT1Q9UIC8 334 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 LGALS16A8MUM7 142 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 BCAMP50895 628 aa11.18□□□□□ -0.62
VCL-201ENST00000211998 GPKOWQ92917 476 aaPredicted RBP eCLIP11.18□□□□□ -0.62
VCL-201ENST00000211998 TTI1O43156 1089 aa11.17□□□□□ -0.62
VCL-201ENST00000211998 LRRN2O75325 713 aa11.17□□□□□ -0.62
VCL-201ENST00000211998 DDIT3P35638 169 aa11.17□□□□□ -0.62
VCL-201ENST00000211998 VHLP40337 213 aa11.17□□□□□ -0.62
VCL-201ENST00000211998 AOC3Q16853 763 aa11.17□□□□□ -0.62
VCL-201ENST00000211998 XKR9Q5GH70 373 aa11.17□□□□□ -0.62
VCL-201ENST00000211998 PDZD4Q76G19 769 aaPredicted RBP11.17□□□□□ -0.62
VCL-201ENST00000211998 SIRT2Q8IXJ6 389 aa11.17□□□□□ -0.62
VCL-201ENST00000211998 FAM210AQ96ND0 272 aa11.17□□□□□ -0.62
VCL-201ENST00000211998 ZIM3Q96PE6 472 aa11.17□□□□□ -0.62
VCL-201ENST00000211998 ZNF804BA4D1E1 1349 aa11.17□□□□□ -0.62
VCL-201ENST00000211998 ATP7BP35670 1465 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms