RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 PMF1-BGLAPU3KQ54 211 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 MYO1FO00160 1098 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 CTNNB1P35222 781 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 VBP1P61758 197 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 RAB3GAP1Q15042 981 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 CYB5D1Q6P9G0 228 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 CYP4V2Q6ZWL3 525 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 RASSF5Q8WWW0 418 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 P3H4Q92791 437 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 L3MBTL3Q96JM7 780 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 ZFYVE19Q96K21 471 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 TRIM47Q96LD4 638 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 PCDHGB5Q9Y5G0 923 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 TNFRSF10BO14763 440 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 GSTO1P78417 241 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 STIM1Q13586 685 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 LILRB1Q8NHL6 650 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 GDAP1Q8TB36 358 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 DIS3LQ8TF46 1054 aaKnown RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 PRCCQ92733 491 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-221ENST00000641996 CCDC74AQ96AQ1 378 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 CNDP1Q96KN2 507 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 PPP2R3BQ9Y5P8 575 aa3.85□□□□□ -1.79
SCN1A-221ENST00000641996 TNPO2O14787 897 aaKnown RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 ZMYND11Q15326 602 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 CCDC6Q16204 474 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 Q3ZCU0 254 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 CWF19L1Q69YN2 538 aaKnown RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 ZER1Q7Z7L7 766 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 TPH2Q8IWU9 490 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 PGBD4Q96DM1 585 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 PRAM1Q96QH2 718 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 PARD6BQ9BYG5 372 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 MYO1AQ9UBC5 1043 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 ZMYND8Q9ULU4 1186 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 NAV3Q8IVL0 2385 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 TTC3P53804 2025 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 CCDC69A6NI79 296 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 PQBP1O60828 265 aaKnown RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 PAK2Q13177 524 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 C8orf34Q49A92 452 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 FAM133BQ5BKY9 247 aaKnown RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 CCDC122Q5T0U0 273 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 STXBP4Q6ZWJ1 553 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 KRT73Q86Y46 540 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 TTC39CQ8N584 583 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 TTLL11Q8NHH1 800 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 MAIP1Q8WWC4 291 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 DGCR14Q96DF8 476 aaKnown RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 ASH2LQ9UBL3 628 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 AASSQ9UDR5 926 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 ANAPC5Q9UJX4 755 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 ABT1Q9ULW3 272 aaKnown RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 MYH1P12882 1939 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 PRR23AA6NEV1 266 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 LMNAP02545 664 aaKnown RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 TBC1D8BQ0IIM8 1120 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 COASYQ13057 564 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 HADHQ16836 314 aaKnown RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 TBRG1Q3YBR2 411 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 NOSTRINQ8IVI9 506 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 MTFMTQ96DP5 389 aaKnown RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 C8orf37Q96NL8 207 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 OLFM3Q96PB7 478 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 RPH3AQ9Y2J0 694 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 RBMX2Q9Y388 322 aaKnown RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 MYH3P11055 1940 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 ZNF335Q9H4Z2 1342 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 CCDC163A0A0D9SF12 145 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 CYP2C19P33261 490 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 POSTNQ15063 836 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 NSUN6Q8TEA1 469 aaKnown RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 RBM42Q9BTD8 480 aaKnown RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 ZNF148Q9UQR1 794 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 CACNA1CQ13936 2221 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 WBP4O75554 376 aaKnown RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 ALAS1P13196 640 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 ALAS2P22557 587 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 G0S2P27469 103 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 POLD2P49005 469 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 MAPK10P53779 464 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 Q5PR19 223 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 ZNF852Q6ZMS4 543 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 TUBGCP2Q9BSJ2 902 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 MXD3Q9BW11 206 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 CCSER1Q9C0I3 900 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 RNF19AQ9NV58 838 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 LRFN1Q9P244 771 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 DNAJB4Q9UDY4 337 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 MAP3K21Q5TCX8 1036 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 DSG4Q86SJ6 1040 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 CDR2LQ86X02 465 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 TBC1D19Q8N5T2 526 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 HIPK4Q8NE63 616 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 TRIM43Q96BQ3 446 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 PRDM11Q9NQV5 511 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 FAM86C1Q9NVL1 165 aa3.84□□□□□ -1.79
SCN1A-221ENST00000641996 MTCL1Q9Y4B5 1905 aaKnown RBP3.84□□□□□ -1.79
SCN1A-221ENST00000641996 SFPQP23246 707 aaKnown RBP eCLIP3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms