RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 RABL3Q5HYI8 236 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 ACBD5Q5T8D3 534 aaPredicted RBP1.21□□□□□ -2.22
VPS35-212ENST00000640313 GTF2IRD2BQ6EKJ0 949 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 RUFY4Q6ZNE9 571 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 Q6ZRM9 215 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 LRRC55Q6ZSA7 311 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 HTR3DQ70Z44 454 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 LARP4Q71RC2 724 aaKnown RBP eCLIP1.21□□□□□ -2.22
VPS35-212ENST00000640313 GTF2IRD2Q86UP8 949 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 GSPT2Q8IYD1 628 aaKnown RBP1.21□□□□□ -2.22
VPS35-212ENST00000640313 KREMEN2Q8NCW0 462 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 BVESQ8NE79 360 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 SHCBP1Q8NEM2 672 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 PROKR1Q8TCW9 393 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 KLHL6Q8WZ60 621 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 MRGPRX3Q96LB0 322 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 C16orf92Q96LL3 132 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 FAM161BQ96MY7 647 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 OR10A2Q9H208 303 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 CLDND1Q9NY35 253 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 RNF7Q9UBF6 113 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 TESQ9UGI8 421 aaKnown RBP1.21□□□□□ -2.22
VPS35-212ENST00000640313 FBXO10Q9UK96 956 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 SUGT1Q9Y2Z0 365 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 INSL6Q9Y581 213 aa1.21□□□□□ -2.22
VPS35-212ENST00000640313 ANKRD33BA6NCL7 494 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 DNAJC9-AS1A6NH13 148 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 GRXCR1A8MXD5 290 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 NOP56O00567 594 aaKnown RBP1.2□□□□□ -2.22
VPS35-212ENST00000640313 SLC27A2O14975 620 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 MEFVO15553 781 aaPredicted RBP1.2□□□□□ -2.22
VPS35-212ENST00000640313 C1RP00736 705 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 HMGCRP04035 888 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 CBSLP0DN79 551 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 HOXC12P31275 282 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 CBSP35520 551 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 EPHA5P54756 1037 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 SMAD3P84022 425 aaKnown RBP1.2□□□□□ -2.22
VPS35-212ENST00000640313 TUSC3Q13454 348 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 KLHL22Q53GT1 634 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 NBPF6Q5VWK0 638 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 KCNV1Q6PIU1 500 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 TRIM59Q8IWR1 403 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 C19orf47Q8N9M1 422 aaKnown RBP1.2□□□□□ -2.22
VPS35-212ENST00000640313 BEND2Q8NDZ0 799 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 RABGGTAQ92696 567 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 TMEM176AQ96HP8 235 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 NBPF4Q96M43 638 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 CCDC140Q96MF4 163 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 FERD3LQ96RJ6 166 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 LRFN3Q9BTN0 628 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 ADGRE3Q9BY15 652 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 KIAA1683Q9H0B3 1180 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 CYP4F11Q9HBI6 524 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 APEX2Q9UBZ4 518 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 VTI1BQ9UEU0 232 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 GGT7Q9UJ14 662 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 NUB1Q9Y5A7 615 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 PCDHA2Q9Y5H9 948 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 NPFFR2Q9Y5X5 522 aa1.2□□□□□ -2.22
VPS35-212ENST00000640313 A0A1W2PQH9 124 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 KLRG2A4D1S0 409 aaPredicted RBP1.19□□□□□ -2.22
VPS35-212ENST00000640313 GOLGA6L6A8MZA4 724 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 ACOT7O00154 380 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 FAM20BO75063 409 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 RBMXL2O75526 392 aaKnown RBP1.19□□□□□ -2.22
VPS35-212ENST00000640313 CPP00450 1065 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 ITGAVP06756 1048 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 KRT10P13645 584 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 LCP1P13796 627 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 TYRP1P17643 537 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 LTBRP36941 435 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 MRE11P49959 708 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 MEOX1P50221 254 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 KCNQ1P51787 676 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 ZNF143P52747 638 aaPredicted RBP1.19□□□□□ -2.22
VPS35-212ENST00000640313 RABGGTBP53611 331 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 USP14P54578 494 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 DBPQ10586 325 aaPredicted RBP1.19□□□□□ -2.22
VPS35-212ENST00000640313 RIN1Q13671 783 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 STILQ15468 1287 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 WDR72Q3MJ13 1102 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 HABP4Q5JVS0 413 aaKnown RBP1.19□□□□□ -2.22
VPS35-212ENST00000640313 NAIF1Q69YI7 327 aaPredicted RBP1.19□□□□□ -2.22
VPS35-212ENST00000640313 Q6YL49 198 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 HS2ST1Q7LGA3 356 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 OTOP3Q7RTS5 596 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 LRP10Q7Z4F1 713 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 PNPLA5Q7Z6Z6 429 aaPredicted RBP1.19□□□□□ -2.22
VPS35-212ENST00000640313 FILIP1Q7Z7B0 1213 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 KIAA0825Q8IV33 1275 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 UHMK1Q8TAS1 419 aaKnown RBP1.19□□□□□ -2.22
VPS35-212ENST00000640313 PIP4K2CQ8TBX8 421 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 WNK4Q96J92 1243 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 CHAMP1Q96JM3 812 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 COQ10AQ96MF6 247 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 MNTQ99583 582 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 APBA2Q99767 749 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 SPON2Q9BUD6 331 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 SPATA5L1Q9BVQ7 753 aa1.19□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms